In addition, Prodigal has been run on all the completed microbial genomes in Genbank.
These results are available below.
Prodigal Analysis of Completed Microbial Genomes (March, 2011)
| Genome |
Genbank Files |
Prodigal Files (Coordinates) |
Prodigal Fasta Translations |
| 'Nostoc azollae' 0708 | Chromosome, Plasmid pAzo01, Plasmid pAzo02 | Chromosome, Plasmid pAzo01, Plasmid pAzo02 | Chromosome, Plasmid pAzo01, Plasmid pAzo02 |
| Acaryochloris marina MBIC11017 | Chromosome, Plasmid pREB1, Plasmid pREB2, Plasmid pREB3, Plasmid pREB4, Plasmid pREB5, Plasmid pREB6, Plasmid pREB7, Plasmid pREB8, Plasmid pREB9 | Chromosome, Plasmid pREB1, Plasmid pREB2, Plasmid pREB3, Plasmid pREB4, Plasmid pREB5, Plasmid pREB6, Plasmid pREB7, Plasmid pREB8, Plasmid pREB9 | Chromosome, Plasmid pREB1, Plasmid pREB2, Plasmid pREB3, Plasmid pREB4, Plasmid pREB5, Plasmid pREB6, Plasmid pREB7, Plasmid pREB8, Plasmid pREB9 |
| Acetobacter pasteurianus IFO 3283-01 | Chromosome, Plasmid pAPA01-011, Plasmid pAPA01-020, Plasmid pAPA01-030, Plasmid pAPA01-040, Plasmid pAPA01-050, Plasmid pAPA01-060 | Chromosome, Plasmid pAPA01-011, Plasmid pAPA01-020, Plasmid pAPA01-030, Plasmid pAPA01-040, Plasmid pAPA01-050, Plasmid pAPA01-060 | Chromosome, Plasmid pAPA01-011, Plasmid pAPA01-020, Plasmid pAPA01-030, Plasmid pAPA01-040, Plasmid pAPA01-050, Plasmid pAPA01-060 |
| Acetobacter pasteurianus IFO 3283-01-42C | Chromosome, Plasmid pAPA42C_011, Plasmid pAPA42C_020, Plasmid pAPA42C_030, Plasmid pAPA42C_040, Plasmid pAPA42C_050, Plasmid pAPA42C_060 | Chromosome, Plasmid pAPA42C_011, Plasmid pAPA42C_020, Plasmid pAPA42C_030, Plasmid pAPA42C_040, Plasmid pAPA42C_050, Plasmid pAPA42C_060 | Chromosome, Plasmid pAPA42C_011, Plasmid pAPA42C_020, Plasmid pAPA42C_030, Plasmid pAPA42C_040, Plasmid pAPA42C_050, Plasmid pAPA42C_060 |
| Acetobacter pasteurianus IFO 3283-03 | Chromosome, Plasmid pAPA03-020, Plasmid pAPA03-030, Plasmid pAPA03-040, Plasmid pAPA03-050, Plasmid pAPA03-060, Plasmid pAPA03-010 | Chromosome, Plasmid pAPA03-020, Plasmid pAPA03-030, Plasmid pAPA03-040, Plasmid pAPA03-050, Plasmid pAPA03-060, Plasmid pAPA03-010 | Chromosome, Plasmid pAPA03-020, Plasmid pAPA03-030, Plasmid pAPA03-040, Plasmid pAPA03-050, Plasmid pAPA03-060, Plasmid pAPA03-010 |
| Acetobacter pasteurianus IFO 3283-07 | Chromosome, Plasmid pAPA07-020, Plasmid pAPA07-040, Plasmid pAPA07-050, Plasmid pAPA07-060, Plasmid pAPA07-030, Plasmid pAPA07-010 | Chromosome, Plasmid pAPA07-020, Plasmid pAPA07-040, Plasmid pAPA07-050, Plasmid pAPA07-060, Plasmid pAPA07-030, Plasmid pAPA07-010 | Chromosome, Plasmid pAPA07-020, Plasmid pAPA07-040, Plasmid pAPA07-050, Plasmid pAPA07-060, Plasmid pAPA07-030, Plasmid pAPA07-010 |
| Acetobacter pasteurianus IFO 3283-12 | Chromosome, Plasmid pAPA12-030, Plasmid pAPA12-040, Plasmid pAPA12-050, Plasmid pAPA12-060, Plasmid pAPA12-020, Plasmid pAPA12-014 | Chromosome, Plasmid pAPA12-030, Plasmid pAPA12-040, Plasmid pAPA12-050, Plasmid pAPA12-060, Plasmid pAPA12-020, Plasmid pAPA12-014 | Chromosome, Plasmid pAPA12-030, Plasmid pAPA12-040, Plasmid pAPA12-050, Plasmid pAPA12-060, Plasmid pAPA12-020, Plasmid pAPA12-014 |
| Acetobacter pasteurianus IFO 3283-22 | Chromosome, Plasmid pAPA22-020, Plasmid pAPA22-030, Plasmid pAPA22-040, Plasmid pAPA22-050, Plasmid pAPA22-060, Plasmid pAPA22-010 | Chromosome, Plasmid pAPA22-020, Plasmid pAPA22-030, Plasmid pAPA22-040, Plasmid pAPA22-050, Plasmid pAPA22-060, Plasmid pAPA22-010 | Chromosome, Plasmid pAPA22-020, Plasmid pAPA22-030, Plasmid pAPA22-040, Plasmid pAPA22-050, Plasmid pAPA22-060, Plasmid pAPA22-010 |
| Acetobacter pasteurianus IFO 3283-26 | Chromosome, Plasmid pAPA26-013, Plasmid pAPA26-020, Plasmid pAPA26-040, Plasmid pAPA26-060, Plasmid pAPA26-050, Plasmid pAPA26-030 | Chromosome, Plasmid pAPA26-013, Plasmid pAPA26-020, Plasmid pAPA26-040, Plasmid pAPA26-060, Plasmid pAPA26-050, Plasmid pAPA26-030 | Chromosome, Plasmid pAPA26-013, Plasmid pAPA26-020, Plasmid pAPA26-040, Plasmid pAPA26-060, Plasmid pAPA26-050, Plasmid pAPA26-030 |
| Acetobacter pasteurianus IFO 3283-32 | Chromosome, Plasmid pAPA32-012, Plasmid pAPA32-020, Plasmid pAPA32-030, Plasmid pAPA32-040, Plasmid pAPA32-050, Plasmid pAPA32-060 | Chromosome, Plasmid pAPA32-012, Plasmid pAPA32-020, Plasmid pAPA32-030, Plasmid pAPA32-040, Plasmid pAPA32-050, Plasmid pAPA32-060 | Chromosome, Plasmid pAPA32-012, Plasmid pAPA32-020, Plasmid pAPA32-030, Plasmid pAPA32-040, Plasmid pAPA32-050, Plasmid pAPA32-060 |
| Acetohalobium arabaticum DSM 5501 | CP002105 | CP002105 | CP002105 |
| Acholeplasma laidlawii PG-8A | CP000896 | CP000896 | CP000896 |
| Achromobacter xylosoxidans A8 | Chromosome, Plasmid pA81, Plasmid pA82 | Chromosome, Plasmid pA81, Plasmid pA82 | Chromosome, Plasmid pA81, Plasmid pA82 |
| Acidaminococcus fermentans DSM 20731 | CP001859 | CP001859 | CP001859 |
| Acidilobus saccharovorans 345-15 | CP001742 | CP001742 | CP001742 |
| Acidimicrobium ferrooxidans DSM 10331 | CP001631 | CP001631 | CP001631 |
| Acidiphilium cryptum JF-5 | Chromosome, Plasmid pACRY02, Plasmid pACRY03, Plasmid pACRY04, Plasmid pACRY05, Plasmid pACRY06, Plasmid pACRY07, Plasmid pACRY08, Plasmid pACRY01 | Chromosome, Plasmid pACRY02, Plasmid pACRY03, Plasmid pACRY04, Plasmid pACRY05, Plasmid pACRY06, Plasmid pACRY07, Plasmid pACRY08, Plasmid pACRY01 | Chromosome, Plasmid pACRY02, Plasmid pACRY03, Plasmid pACRY04, Plasmid pACRY05, Plasmid pACRY06, Plasmid pACRY07, Plasmid pACRY08, Plasmid pACRY01 |
| Acidithiobacillus ferrooxidans ATCC 23270 | CP001219 | CP001219 | CP001219 |
| Acidithiobacillus ferrooxidans ATCC 53993 | CP001132 | CP001132 | CP001132 |
| Acidobacterium capsulatum ATCC 51196 | CP001472 | CP001472 | CP001472 |
| Acidobacterium sp. MP5ACTX9 | Chromosome, Plasmid pACIX901, Plasmid pACIX902, Plasmid pACIX903, Plasmid pACIX904, Plasmid pACIX905 | Chromosome, Plasmid pACIX901, Plasmid pACIX902, Plasmid pACIX903, Plasmid pACIX904, Plasmid pACIX905 | Chromosome, Plasmid pACIX901, Plasmid pACIX902, Plasmid pACIX903, Plasmid pACIX904, Plasmid pACIX905 |
| Acidothermus cellulolyticus 11B | CP000481 | CP000481 | CP000481 |
| Acidovorax avenae subsp. avenae ATCC 19860 | CP002521 | CP002521 | CP002521 |
| Acidovorax citrulli AAC00-1 | CP000512 | CP000512 | CP000512 |
| Acidovorax ebreus TPSY | CP001392 | CP001392 | CP001392 |
| Acidovorax sp. JS42 | Chromosome, Plasmid pAOVO02, Plasmid pAOVO01 | Chromosome, Plasmid pAOVO02, Plasmid pAOVO01 | Chromosome, Plasmid pAOVO02, Plasmid pAOVO01 |
| Aciduliprofundum boonei T469 | CP001941 | CP001941 | CP001941 |
| Acinetobacter baumannii 1656-2 | Chromosome, Plasmid ABKp1, Plasmid ABKp2 | Chromosome, Plasmid ABKp1, Plasmid ABKp2 | Chromosome, Plasmid ABKp1, Plasmid ABKp2 |
| Acinetobacter baumannii AB0057 | Chromosome, Plasmid pAB0057 | Chromosome, Plasmid pAB0057 | Chromosome, Plasmid pAB0057 |
| Acinetobacter baumannii AB307-0294 | CP001172 | CP001172 | CP001172 |
| Acinetobacter baumannii ACICU | Chromosome, Plasmid pACICU2, Plasmid pACICU1 | Chromosome, Plasmid pACICU2, Plasmid pACICU1 | Chromosome, Plasmid pACICU2, Plasmid pACICU1 |
| Acinetobacter baumannii ATCC 17978 | Chromosome, Plasmid pAB2, Plasmid pAB1 | Chromosome, Plasmid pAB2, Plasmid pAB1 | Chromosome, Plasmid pAB2, Plasmid pAB1 |
| Acinetobacter baumannii AYE | Chromosome, Plasmid p1ABAYE, Plasmid p2ABAYE, Plasmid p4ABAYE, Plasmid p3ABAYE | Chromosome, Plasmid p1ABAYE, Plasmid p2ABAYE, Plasmid p4ABAYE, Plasmid p3ABAYE | Chromosome, Plasmid p1ABAYE, Plasmid p2ABAYE, Plasmid p4ABAYE, Plasmid p3ABAYE |
| Acinetobacter baumannii SDF | Chromosome, Plasmid p1ABSDF, Plasmid p2ABSDF, Plasmid p3ABSDF | Chromosome, Plasmid p1ABSDF, Plasmid p2ABSDF, Plasmid p3ABSDF | Chromosome, Plasmid p1ABSDF, Plasmid p2ABSDF, Plasmid p3ABSDF |
| Acinetobacter baumannii TCDC-AB0715 | Chromosome, Plasmid p1ABTCDC0715, Plasmid p2ABTCDC0715 | Chromosome, Plasmid p1ABTCDC0715, Plasmid p2ABTCDC0715 | Chromosome, Plasmid p1ABTCDC0715, Plasmid p2ABTCDC0715 |
| Acinetobacter sp. ADP1 | CR543861 | CR543861 | CR543861 |
| Acinetobacter sp. DR1 | CP002080 | CP002080 | CP002080 |
| Actinobacillus pleuropneumoniae serovar 3 str. JL03 | CP000687 | CP000687 | CP000687 |
| Actinobacillus pleuropneumoniae serovar 5b str. L20 | CP000569 | CP000569 | CP000569 |
| Actinobacillus pleuropneumoniae serovar 7 str. AP76 | Chromosome, Plasmid ABB7_B, Plasmid APP7_A, Plasmid APP7_C | Chromosome, Plasmid ABB7_B, Plasmid APP7_A, Plasmid APP7_C | Chromosome, Plasmid ABB7_B, Plasmid APP7_A, Plasmid APP7_C |
| Actinobacillus succinogenes 130Z | CP000746 | CP000746 | CP000746 |
| Actinosynnema mirum DSM 43827 | CP001630 | CP001630 | CP001630 |
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | CP000462 | CP000462 | CP000462 |
| Aeromonas salmonicida subsp. salmonicida A449 | Chromosome, Plasmid pAsa1, Plasmid pAsa2, Plasmid pAsa3, Plasmid 4, Plasmid 5 | Chromosome, Plasmid pAsa1, Plasmid pAsa2, Plasmid pAsa3, Plasmid 4, Plasmid 5 | Chromosome, Plasmid pAsa1, Plasmid pAsa2, Plasmid pAsa3, Plasmid 4, Plasmid 5 |
| Aeropyrum pernix K1 | BA000002 | BA000002 | BA000002 |
| Aggregatibacter actinomycetemcomitans D11S-1 | Chromosome, Linear DNA, Plasmid S25, Plasmid S57 | Chromosome, Linear DNA, Plasmid S25, Plasmid S57 | Chromosome, Linear DNA, Plasmid S25, Plasmid S57 |
| Aggregatibacter aphrophilus NJ8700 | CP001607 | CP001607 | CP001607 |
| Agrobacterium radiobacter K84 | Chromosome 1, Chromosome 2, Plasmid pAgK84, Plasmid pAtK84b, Plasmid pAtK84c | Chromosome 1, Chromosome 2, Plasmid pAgK84, Plasmid pAtK84b, Plasmid pAtK84c | Chromosome 1, Chromosome 2, Plasmid pAgK84, Plasmid pAtK84b, Plasmid pAtK84c |
| Agrobacterium sp. H13-3 | Chromosome, Plasmid pAspH13-3a, Chromosome | Chromosome, Plasmid pAspH13-3a, Chromosome | Chromosome, Plasmid pAspH13-3a, Chromosome |
| Agrobacterium tumefaciens str. C58 | Chromosome circular, Chromosome linear, Plasmid At, Plasmid Ti | Chromosome circular, Chromosome linear, Plasmid At, Plasmid Ti | Chromosome circular, Chromosome linear, Plasmid At, Plasmid Ti |
| Agrobacterium vitis S4 | Chromosome 1, Chromosome 2, Plasmid pTiS4, Plasmid pAtS4e, Plasmid pAtS4a, Plasmid pAtS4b, Plasmid pAtS4c | Chromosome 1, Chromosome 2, Plasmid pTiS4, Plasmid pAtS4e, Plasmid pAtS4a, Plasmid pAtS4b, Plasmid pAtS4c | Chromosome 1, Chromosome 2, Plasmid pTiS4, Plasmid pAtS4e, Plasmid pAtS4a, Plasmid pAtS4b, Plasmid pAtS4c |
| Akkermansia muciniphila ATCC BAA-835 | CP001071 | CP001071 | CP001071 |
| Alcanivorax borkumensis SK2 | AM286690 | AM286690 | AM286690 |
| Alicycliphilus denitrificans BC | Chromosome, Plasmid pALIDE01, Plasmid pALIDE02 | Chromosome, Plasmid pALIDE01, Plasmid pALIDE02 | Chromosome, Plasmid pALIDE01, Plasmid pALIDE02 |
| Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 | Chromosome, Plasmid pAACI01, Plasmid pAACI02, Plasmid pAACI03 | Chromosome, Plasmid pAACI01, Plasmid pAACI02, Plasmid pAACI03 | Chromosome, Plasmid pAACI01, Plasmid pAACI02, Plasmid pAACI03 |
| Aliivibrio salmonicida LFI1238 | Chromosome 1, Chromosome 2, Plasmid pVSAL320, Plasmid pVSAL54, Plasmid pVSAL43, Plasmid pVSAL840 | Chromosome 1, Chromosome 2, Plasmid pVSAL320, Plasmid pVSAL54, Plasmid pVSAL43, Plasmid pVSAL840 | Chromosome 1, Chromosome 2, Plasmid pVSAL320, Plasmid pVSAL54, Plasmid pVSAL43, Plasmid pVSAL840 |
| Alistipes shahii WAL 8301 | FP929032 | FP929032 | FP929032 |
| Alkalilimnicola ehrlichii MLHE-1 | CP000453 | CP000453 | CP000453 |
| Alkaliphilus metalliredigens QYMF | CP000724 | CP000724 | CP000724 |
| Alkaliphilus oremlandii OhILAs | CP000853 | CP000853 | CP000853 |
| Allochromatium vinosum DSM 180 | Chromosome, Plasmid pALVIN02, Plasmid pALVIN01 | Chromosome, Plasmid pALVIN02, Plasmid pALVIN01 | Chromosome, Plasmid pALVIN02, Plasmid pALVIN01 |
| Alteromonas macleodii 'Deep ecotype' | CP001103 | CP001103 | CP001103 |
| Aminobacterium colombiense DSM 12261 | CP001997 | CP001997 | CP001997 |
| Ammonifex degensii KC4 | Chromosome, Plasmid pADEG01 | Chromosome, Plasmid pADEG01 | Chromosome, Plasmid pADEG01 |
| Amycolatopsis mediterranei U32 | CP002000 | CP002000 | CP002000 |
| Anabaena variabilis ATCC 29413 | Chromosome, Plasmid B, Plasmid C, Plasmid A, Chromosome | Chromosome, Plasmid B, Plasmid C, Plasmid A, Chromosome | Chromosome, Plasmid B, Plasmid C, Plasmid A, Chromosome |
| Anaerococcus prevotii DSM 20548 | Chromosome, Plasmid pAPRE01 | Chromosome, Plasmid pAPRE01 | Chromosome, Plasmid pAPRE01 |
| Anaerolinea thermophila UNI-1 | AP012029 | AP012029 | AP012029 |
| Anaeromyxobacter dehalogenans 2CP-1 | CP001359 | CP001359 | CP001359 |
| Anaeromyxobacter dehalogenans 2CP-C | CP000251 | CP000251 | CP000251 |
| Anaeromyxobacter sp. Fw109-5 | CP000769 | CP000769 | CP000769 |
| Anaeromyxobacter sp. K | CP001131 | CP001131 | CP001131 |
| Anaplasma centrale str. Israel | CP001759 | CP001759 | CP001759 |
| Anaplasma marginale str. Florida | CP001079 | CP001079 | CP001079 |
| Anaplasma marginale str. St. Maries | CP000030 | CP000030 | CP000030 |
| Anaplasma phagocytophilum HZ | CP000235 | CP000235 | CP000235 |
| Anoxybacillus flavithermus WK1 | CP000922 | CP000922 | CP000922 |
| Aquifex aeolicus VF5 | Chromosome, Plasmid ece1 | Chromosome, Plasmid ece1 | Chromosome, Plasmid ece1 |
| Arcanobacterium haemolyticum DSM 20595 | CP002045 | CP002045 | CP002045 |
| Archaeoglobus fulgidus DSM 4304 | AE000782 | AE000782 | AE000782 |
| Archaeoglobus profundus DSM 5631 | Chromosome, Plasmid pArcpr01 | Chromosome, Plasmid pArcpr01 | Chromosome, Plasmid pArcpr01 |
| Arcobacter butzleri RM4018 | CP000361 | CP000361 | CP000361 |
| Arcobacter nitrofigilis DSM 7299 | CP001999 | CP001999 | CP001999 |
| Aromatoleum aromaticum EbN1 | Chromosome, Plasmid 1, Plasmid 2 | Chromosome, Plasmid 1, Plasmid 2 | Chromosome, Plasmid 1, Plasmid 2 |
| Arthrobacter arilaitensis Re117 | Chromosome ANONYMOUS, Plasmid pRE117-2, Plasmid pRE117-1 | Chromosome ANONYMOUS, Plasmid pRE117-2, Plasmid pRE117-1 | Chromosome ANONYMOUS, Plasmid pRE117-2, Plasmid pRE117-1 |
| Arthrobacter aurescens TC1 | Chromosome, Plasmid TC2, Plasmid TC1 | Chromosome, Plasmid TC2, Plasmid TC1 | Chromosome, Plasmid TC2, Plasmid TC1 |
| Arthrobacter chlorophenolicus A6 | Chromosome, Plasmid pACHL02, Plasmid pACHL01 | Chromosome, Plasmid pACHL02, Plasmid pACHL01 | Chromosome, Plasmid pACHL02, Plasmid pACHL01 |
| Arthrobacter phenanthrenivorans Sphe3 | Chromosome, Plasmid pASPHE301, Plasmid pASPHE302 | Chromosome, Plasmid pASPHE301, Plasmid pASPHE302 | Chromosome, Plasmid pASPHE301, Plasmid pASPHE302 |
| Arthrobacter sp. FB24 | Chromosome 1, Plasmid 1, Plasmid 2, Plasmid 3 | Chromosome 1, Plasmid 1, Plasmid 2, Plasmid 3 | Chromosome 1, Plasmid 1, Plasmid 2, Plasmid 3 |
| Arthrospira platensis NIES-39 | AP011615 | AP011615 | AP011615 |
| Aster yellows witches'-broom phytoplasma AYWB | Chromosome, Plasmid pAYWB-II, Plasmid pAYWB-III, Plasmid pAYWB-IV, Plasmid pAYWB-I | Chromosome, Plasmid pAYWB-II, Plasmid pAYWB-III, Plasmid pAYWB-IV, Plasmid pAYWB-I | Chromosome, Plasmid pAYWB-II, Plasmid pAYWB-III, Plasmid pAYWB-IV, Plasmid pAYWB-I |
| Asticcacaulis excentricus CB 48 | Chromosome 1, Plasmid pASTEX01, Chromosome 2, Plasmid pASTEX02 | Chromosome 1, Plasmid pASTEX01, Chromosome 2, Plasmid pASTEX02 | Chromosome 1, Plasmid pASTEX01, Chromosome 2, Plasmid pASTEX02 |
| Atopobium parvulum DSM 20469 | CP001721 | CP001721 | CP001721 |
| Azoarcus sp. BH72 | AM406670 | AM406670 | AM406670 |
| Azorhizobium caulinodans ORS 571 | AP009384 | AP009384 | AP009384 |
| Azospirillum sp. B510 | Chromosome, Plasmid pAB510c, Plasmid pAB510d, Plasmid pAB510e, Plasmid pAB510f, Plasmid pAB510a, Plasmid pAB510b | Chromosome, Plasmid pAB510c, Plasmid pAB510d, Plasmid pAB510e, Plasmid pAB510f, Plasmid pAB510a, Plasmid pAB510b | Chromosome, Plasmid pAB510c, Plasmid pAB510d, Plasmid pAB510e, Plasmid pAB510f, Plasmid pAB510a, Plasmid pAB510b |
| Azotobacter vinelandii DJ | CP001157 | CP001157 | CP001157 |
| Bacillus amyloliquefaciens DSM 7 | FN597644 | FN597644 | FN597644 |
| Bacillus amyloliquefaciens FZB42 | CP000560 | CP000560 | CP000560 |
| Bacillus anthracis str. 'Ames Ancestor' | Chromosome, Plasmid pXO2, Plasmid pXO1 | Chromosome, Plasmid pXO2, Plasmid pXO1 | Chromosome, Plasmid pXO2, Plasmid pXO1 |
| Bacillus anthracis str. A0248 | Chromosome, Plasmid pXO1, Plasmid pXO2 | Chromosome, Plasmid pXO1, Plasmid pXO2 | Chromosome, Plasmid pXO1, Plasmid pXO2 |
| Bacillus anthracis str. Ames | AE016879 | AE016879 | AE016879 |
| Bacillus anthracis str. CDC 684 | Chromosome, Plasmid pX01, Plasmid pX02 | Chromosome, Plasmid pX01, Plasmid pX02 | Chromosome, Plasmid pX01, Plasmid pX02 |
| Bacillus anthracis str. Sterne | AE017225 | AE017225 | AE017225 |
| Bacillus atrophaeus 1942 | CP002207 | CP002207 | CP002207 |
| Bacillus cellulosilyticus DSM 2522 | CP002394 | CP002394 | CP002394 |
| Bacillus cereus 03BB102 | Chromosome, Plasmid p03BB102_179 | Chromosome, Plasmid p03BB102_179 | Chromosome, Plasmid p03BB102_179 |
| Bacillus cereus AH187 | Chromosome, Plasmid pAH187_270, Plasmid pAH187_45, Plasmid pAH187_3, Plasmid pAH187_12 | Chromosome, Plasmid pAH187_270, Plasmid pAH187_45, Plasmid pAH187_3, Plasmid pAH187_12 | Chromosome, Plasmid pAH187_270, Plasmid pAH187_45, Plasmid pAH187_3, Plasmid pAH187_12 |
| Bacillus cereus AH820 | Chromosome, Plasmid pAH820_272, Plasmid pAH820_10, Plasmid pAH820_3 | Chromosome, Plasmid pAH820_272, Plasmid pAH820_10, Plasmid pAH820_3 | Chromosome, Plasmid pAH820_272, Plasmid pAH820_10, Plasmid pAH820_3 |
| Bacillus cereus ATCC 10987 | Chromosome, Plasmid pBc10987 | Chromosome, Plasmid pBc10987 | Chromosome, Plasmid pBc10987 |
| Bacillus cereus ATCC 14579 | Chromosome, Plasmid pBClin15 | Chromosome, Plasmid pBClin15 | Chromosome, Plasmid pBClin15 |
| Bacillus cereus B4264 | CP001176 | CP001176 | CP001176 |
| Bacillus cereus E33L | Chromosome, Plasmid pE33L466, Plasmid pE33L5, Plasmid pE33L54, Plasmid pE33L8, Plasmid pE33L9 | Chromosome, Plasmid pE33L466, Plasmid pE33L5, Plasmid pE33L54, Plasmid pE33L8, Plasmid pE33L9 | Chromosome, Plasmid pE33L466, Plasmid pE33L5, Plasmid pE33L54, Plasmid pE33L8, Plasmid pE33L9 |
| Bacillus cereus G9842 | Chromosome, Plasmid pG9842_140, Plasmid pG9842_209 | Chromosome, Plasmid pG9842_140, Plasmid pG9842_209 | Chromosome, Plasmid pG9842_140, Plasmid pG9842_209 |
| Bacillus cereus Q1 | Chromosome, Plasmid pBc53, Plasmid pBc239 | Chromosome, Plasmid pBc53, Plasmid pBc239 | Chromosome, Plasmid pBc53, Plasmid pBc239 |
| Bacillus cereus biovar anthracis str. CI | Chromosome, Plasmid pCI-XO1, Plasmid pCI-XO2, Plasmid pBAslCI14 | Chromosome, Plasmid pCI-XO1, Plasmid pCI-XO2, Plasmid pBAslCI14 | Chromosome, Plasmid pCI-XO1, Plasmid pCI-XO2, Plasmid pBAslCI14 |
| Bacillus clausii KSM-K16 | AP006627 | AP006627 | AP006627 |
| Bacillus cytotoxicus NVH 391-98 | Chromosome, Plasmid pBC9801 | Chromosome, Plasmid pBC9801 | Chromosome, Plasmid pBC9801 |
| Bacillus halodurans C-125 | BA000004 | BA000004 | BA000004 |
| Bacillus licheniformis ATCC 14580 | CP000002 | CP000002 | CP000002 |
| Bacillus licheniformis ATCC 14580 | AE017333 | AE017333 | AE017333 |
| Bacillus megaterium DSM 319 | CP001982 | CP001982 | CP001982 |
| Bacillus megaterium QM B1551 | Plasmid pBM200, Plasmid pBM300, Plasmid pBM400, Plasmid pBM500, Plasmid pBM600, Plasmid pBM700, Chromosome, Plasmid pBM100 | Plasmid pBM200, Plasmid pBM300, Plasmid pBM400, Plasmid pBM500, Plasmid pBM600, Plasmid pBM700, Chromosome, Plasmid pBM100 | Plasmid pBM200, Plasmid pBM300, Plasmid pBM400, Plasmid pBM500, Plasmid pBM600, Plasmid pBM700, Chromosome, Plasmid pBM100 |
| Bacillus pseudofirmus OF4 | Chromosome, Plasmid pBpOF4-02, Plasmid pBpOF4-01 | Chromosome, Plasmid pBpOF4-02, Plasmid pBpOF4-01 | Chromosome, Plasmid pBpOF4-02, Plasmid pBpOF4-01 |
| Bacillus pumilus SAFR-032 | CP000813 | CP000813 | CP000813 |
| Bacillus selenitireducens MLS10 | CP001791 | CP001791 | CP001791 |
| Bacillus subtilis BSn5 | CP002468 | CP002468 | CP002468 |
| Bacillus subtilis subsp. natto BEST195 | Chromosome ANONYMOUS, Plasmid pBEST195S | Chromosome ANONYMOUS, Plasmid pBEST195S | Chromosome ANONYMOUS, Plasmid pBEST195S |
| Bacillus subtilis subsp. spizizenii str. W23 | CP002183 | CP002183 | CP002183 |
| Bacillus subtilis subsp. subtilis str. 168 | AL009126 | AL009126 | AL009126 |
| Bacillus thuringiensis BMB171 | Chromosome, Plasmid pBMB171 | Chromosome, Plasmid pBMB171 | Chromosome, Plasmid pBMB171 |
| Bacillus thuringiensis serovar finitimus YBT-020 | Chromosome, Plasmid pBMB26, Plasmid pBMB28 | Chromosome, Plasmid pBMB26, Plasmid pBMB28 | Chromosome, Plasmid pBMB26, Plasmid pBMB28 |
| Bacillus thuringiensis serovar konkukian str. 97-27 | Chromosome, Plasmid pBT9727 | Chromosome, Plasmid pBT9727 | Chromosome, Plasmid pBT9727 |
| Bacillus thuringiensis str. Al Hakam | Chromosome, Plasmid pALH1 | Chromosome, Plasmid pALH1 | Chromosome, Plasmid pALH1 |
| Bacillus tusciae DSM 2912 | CP002017 | CP002017 | CP002017 |
| Bacillus weihenstephanensis KBAB4 | Chromosome, Plasmid pBWB402, Plasmid pBWB403, Plasmid pBWB404, Plasmid pBWB401 | Chromosome, Plasmid pBWB402, Plasmid pBWB403, Plasmid pBWB404, Plasmid pBWB401 | Chromosome, Plasmid pBWB402, Plasmid pBWB403, Plasmid pBWB404, Plasmid pBWB401 |
| Bacteriovorax marinus SJ | FQ312005 | FQ312005 | FQ312005 |
| Bacteroides fragilis 638R | FQ312004 | FQ312004 | FQ312004 |
| Bacteroides fragilis NCTC 9343 | Chromosome, Plasmid pBF9343 | Chromosome, Plasmid pBF9343 | Chromosome, Plasmid pBF9343 |
| Bacteroides fragilis YCH46 | Chromosome, Plasmid pBFY46 | Chromosome, Plasmid pBFY46 | Chromosome, Plasmid pBFY46 |
| Bacteroides helcogenes P 36-108 | CP002352 | CP002352 | CP002352 |
| Bacteroides salanitronis DSM 18170 | Chromosome, Plasmid pBACSA01, Plasmid pBACSA02, Plasmid pBACSA03 | Chromosome, Plasmid pBACSA01, Plasmid pBACSA02, Plasmid pBACSA03 | Chromosome, Plasmid pBACSA01, Plasmid pBACSA02, Plasmid pBACSA03 |
| Bacteroides thetaiotaomicron VPI-5482 | Chromosome, Plasmid p5482 | Chromosome, Plasmid p5482 | Chromosome, Plasmid p5482 |
| Bacteroides vulgatus ATCC 8482 | CP000139 | CP000139 | CP000139 |
| Bacteroides xylanisolvens XB1A | FP929033 | FP929033 | FP929033 |
| Bartonella bacilliformis KC583 | CP000524 | CP000524 | CP000524 |
| Bartonella clarridgeiae 73 | FN645454 | FN645454 | FN645454 |
| Bartonella grahamii as4aup | Chromosome, Plasmid pBGR3 | Chromosome, Plasmid pBGR3 | Chromosome, Plasmid pBGR3 |
| Bartonella henselae str. Houston-1 | BX897699 | BX897699 | BX897699 |
| Bartonella quintana str. Toulouse | BX897700 | BX897700 | BX897700 |
| Bartonella tribocorum CIP 105476 | Chromosome, Plasmid pBT01 | Chromosome, Plasmid pBT01 | Chromosome, Plasmid pBT01 |
| Baumannia cicadellinicola str. Hc (Homalodisca coagulata) | CP000238 | CP000238 | CP000238 |
| Bdellovibrio bacteriovorus HD100 | BX842601 | BX842601 | BX842601 |
| Beijerinckia indica subsp. indica ATCC 9039 | Chromosome, Plasmid pBIND02, Plasmid pBIND01 | Chromosome, Plasmid pBIND02, Plasmid pBIND01 | Chromosome, Plasmid pBIND02, Plasmid pBIND01 |
| Beutenbergia cavernae DSM 12333 | CP001618 | CP001618 | CP001618 |
| Bifidobacterium adolescentis ATCC 15703 | AP009256 | AP009256 | AP009256 |
| Bifidobacterium animalis subsp. lactis AD011 | CP001213 | CP001213 | CP001213 |
| Bifidobacterium animalis subsp. lactis BB-12 | CP001853 | CP001853 | CP001853 |
| Bifidobacterium animalis subsp. lactis Bl-04 | CP001515 | CP001515 | CP001515 |
| Bifidobacterium animalis subsp. lactis DSM 10140 | CP001606 | CP001606 | CP001606 |
| Bifidobacterium animalis subsp. lactis V9 | CP001892 | CP001892 | CP001892 |
| Bifidobacterium bifidum PRL2010 | CP001840 | CP001840 | CP001840 |
| Bifidobacterium bifidum S17 | CP002220 | CP002220 | CP002220 |
| Bifidobacterium dentium Bd1 | CP001750 | CP001750 | CP001750 |
| Bifidobacterium longum DJO10A | Chromosome, Plasmid pDOJH10L, Plasmid pDOJH10S | Chromosome, Plasmid pDOJH10L, Plasmid pDOJH10S | Chromosome, Plasmid pDOJH10L, Plasmid pDOJH10S |
| Bifidobacterium longum NCC2705 | Chromosome, Plasmid pBLO1 | Chromosome, Plasmid pBLO1 | Chromosome, Plasmid pBLO1 |
| Bifidobacterium longum subsp. infantis 157F | Chromosome ANONYMOUS, Plasmid p157F-NC1, Plasmid p157F-NC2 | Chromosome ANONYMOUS, Plasmid p157F-NC1, Plasmid p157F-NC2 | Chromosome ANONYMOUS, Plasmid p157F-NC1, Plasmid p157F-NC2 |
| Bifidobacterium longum subsp. infantis ATCC 15697 | CP001095 | CP001095 | CP001095 |
| Bifidobacterium longum subsp. longum BBMN68 | CP002286 | CP002286 | CP002286 |
| Bifidobacterium longum subsp. longum F8 | FP929034 | FP929034 | FP929034 |
| Bifidobacterium longum subsp. longum JCM 1217 | AP010888 | AP010888 | AP010888 |
| Bifidobacterium longum subsp. longum JDM301 | CP002010 | CP002010 | CP002010 |
| Blattabacterium sp. (Blattella germanica) str. Bge | CP001487 | CP001487 | CP001487 |
| Blattabacterium sp. (Periplaneta americana) str. BPLAN | Chromosome, Plasmid pBPLAN | Chromosome, Plasmid pBPLAN | Chromosome, Plasmid pBPLAN |
| Bordetella avium 197N | AM167904 | AM167904 | AM167904 |
| Bordetella bronchiseptica RB50 | BX470250 | BX470250 | BX470250 |
| Bordetella parapertussis 12822 | BX470249 | BX470249 | BX470249 |
| Bordetella pertussis Tohama I | BX470248 | BX470248 | BX470248 |
| Bordetella petrii DSM 12804 | AM902716 | AM902716 | AM902716 |
| Borrelia afzelii PKo | Chromosome, Plasmid lp60, Plasmid lp60-2, Plasmid lp34, Plasmid lp32, Plasmid cp30, Plasmid lp28, Plasmid cp27, Plasmid lp25, Plasmid scaffold lp31, Plasmid scaffold lp31, Plasmid scaffold lp31 | Chromosome, Plasmid lp60, Plasmid lp60-2, Plasmid lp34, Plasmid lp32, Plasmid cp30, Plasmid lp28, Plasmid cp27, Plasmid lp25, Plasmid scaffold lp31, Plasmid scaffold lp31, Plasmid scaffold lp31 | Chromosome, Plasmid lp60, Plasmid lp60-2, Plasmid lp34, Plasmid lp32, Plasmid cp30, Plasmid lp28, Plasmid cp27, Plasmid lp25, Plasmid scaffold lp31, Plasmid scaffold lp31, Plasmid scaffold lp31 |
| Borrelia burgdorferi B31 | Chromosome, Plasmid cp9, Plasmid cp26, Plasmid cp32-1, Plasmid cp32-3, Plasmid cp32-4, Plasmid cp32-6, Plasmid cp32-7, Plasmid cp32-8, Plasmid cp32-9, Plasmid lp5, Plasmid lp21, Plasmid lp56, Plasmid lp17, Plasmid lp25, Plasmid lp28-1, Plasmid lp28-2, Plasmid lp28-3, Plasmid lp28-4, Plasmid lp36, Plasmid lp38, Plasmid lp54 | Chromosome, Plasmid cp9, Plasmid cp26, Plasmid cp32-1, Plasmid cp32-3, Plasmid cp32-4, Plasmid cp32-6, Plasmid cp32-7, Plasmid cp32-8, Plasmid cp32-9, Plasmid lp5, Plasmid lp21, Plasmid lp56, Plasmid lp17, Plasmid lp25, Plasmid lp28-1, Plasmid lp28-2, Plasmid lp28-3, Plasmid lp28-4, Plasmid lp36, Plasmid lp38, Plasmid lp54 | Chromosome, Plasmid cp9, Plasmid cp26, Plasmid cp32-1, Plasmid cp32-3, Plasmid cp32-4, Plasmid cp32-6, Plasmid cp32-7, Plasmid cp32-8, Plasmid cp32-9, Plasmid lp5, Plasmid lp21, Plasmid lp56, Plasmid lp17, Plasmid lp25, Plasmid lp28-1, Plasmid lp28-2, Plasmid lp28-3, Plasmid lp28-4, Plasmid lp36, Plasmid lp38, Plasmid lp54 |
| Borrelia burgdorferi JD1 | Chromosome, Plasmid JD1_lp54, Plasmid JD1 lp28-1, Plasmid JD1 cp32-6, Plasmid JD1 lp25, Plasmid JD1 cp32-11, Plasmid JD1 cp32-1+5, Plasmid JD1 cp32-8, Plasmid JD1 lp17, Plasmid JD1 lp28-3, Plasmid JD1 lp36, Plasmid JD1 cp26, Plasmid JD1 lp28-5, Plasmid JD1 lp28-4, Plasmid JD1 lp28-7, Plasmid JD1 cp32-3, Plasmid JD1 cp32-12, Plasmid JD1 cp32-9, Plasmid JD1 cp32-10, Plasmid JD1 lp28-6, Plasmid JD1 lp38 | Chromosome, Plasmid JD1_lp54, Plasmid JD1 lp28-1, Plasmid JD1 cp32-6, Plasmid JD1 lp25, Plasmid JD1 cp32-11, Plasmid JD1 cp32-1+5, Plasmid JD1 cp32-8, Plasmid JD1 lp17, Plasmid JD1 lp28-3, Plasmid JD1 lp36, Plasmid JD1 cp26, Plasmid JD1 lp28-5, Plasmid JD1 lp28-4, Plasmid JD1 lp28-7, Plasmid JD1 cp32-3, Plasmid JD1 cp32-12, Plasmid JD1 cp32-9, Plasmid JD1 cp32-10, Plasmid JD1 lp28-6, Plasmid JD1 lp38 | Chromosome, Plasmid JD1_lp54, Plasmid JD1 lp28-1, Plasmid JD1 cp32-6, Plasmid JD1 lp25, Plasmid JD1 cp32-11, Plasmid JD1 cp32-1+5, Plasmid JD1 cp32-8, Plasmid JD1 lp17, Plasmid JD1 lp28-3, Plasmid JD1 lp36, Plasmid JD1 cp26, Plasmid JD1 lp28-5, Plasmid JD1 lp28-4, Plasmid JD1 lp28-7, Plasmid JD1 cp32-3, Plasmid JD1 cp32-12, Plasmid JD1 cp32-9, Plasmid JD1 cp32-10, Plasmid JD1 lp28-6, Plasmid JD1 lp38 |
| Borrelia burgdorferi N40 | Chromosome, Plasmid N40_lp54, Plasmid N40_cp32-5, Plasmid N40_cp32-7, Plasmid N40_lp36, Plasmid N40_cp9, Plasmid N40_lp28-2, Plasmid N40_lp28-5, Plasmid N40_lp25, Plasmid N40_cp32-4, Plasmid N40_lp28-4, Plasmid N40_lp38, Plasmid N40_cp32-12, Plasmid N40_cp26, Plasmid N40_cp32-10, Plasmid N40_lp17, Plasmid N40_cp32-9 | Chromosome, Plasmid N40_lp54, Plasmid N40_cp32-5, Plasmid N40_cp32-7, Plasmid N40_lp36, Plasmid N40_cp9, Plasmid N40_lp28-2, Plasmid N40_lp28-5, Plasmid N40_lp25, Plasmid N40_cp32-4, Plasmid N40_lp28-4, Plasmid N40_lp38, Plasmid N40_cp32-12, Plasmid N40_cp26, Plasmid N40_cp32-10, Plasmid N40_lp17, Plasmid N40_cp32-9 | Chromosome, Plasmid N40_lp54, Plasmid N40_cp32-5, Plasmid N40_cp32-7, Plasmid N40_lp36, Plasmid N40_cp9, Plasmid N40_lp28-2, Plasmid N40_lp28-5, Plasmid N40_lp25, Plasmid N40_cp32-4, Plasmid N40_lp28-4, Plasmid N40_lp38, Plasmid N40_cp32-12, Plasmid N40_cp26, Plasmid N40_cp32-10, Plasmid N40_lp17, Plasmid N40_cp32-9 |
| Borrelia burgdorferi ZS7 | Chromosome, Plasmid ZS7_lp54, Plasmid ZS7_cp32-12, Plasmid ZS7_lp36, Plasmid ZS7_cp32-3+10, Plasmid ZS7_lp28-3, Plasmid ZS7_lp17, Plasmid ZS7_cp32-1, Plasmid ZS7_lp28-4, Plasmid ZS7_cp32-4, Plasmid ZS7_lp28-2, Plasmid ZS7_lp28-1, Plasmid ZS7_cp32-9, Plasmid ZS7_cp26, Plasmid ZS7_lp25 | Chromosome, Plasmid ZS7_lp54, Plasmid ZS7_cp32-12, Plasmid ZS7_lp36, Plasmid ZS7_cp32-3+10, Plasmid ZS7_lp28-3, Plasmid ZS7_lp17, Plasmid ZS7_cp32-1, Plasmid ZS7_lp28-4, Plasmid ZS7_cp32-4, Plasmid ZS7_lp28-2, Plasmid ZS7_lp28-1, Plasmid ZS7_cp32-9, Plasmid ZS7_cp26, Plasmid ZS7_lp25 | Chromosome, Plasmid ZS7_lp54, Plasmid ZS7_cp32-12, Plasmid ZS7_lp36, Plasmid ZS7_cp32-3+10, Plasmid ZS7_lp28-3, Plasmid ZS7_lp17, Plasmid ZS7_cp32-1, Plasmid ZS7_lp28-4, Plasmid ZS7_cp32-4, Plasmid ZS7_lp28-2, Plasmid ZS7_lp28-1, Plasmid ZS7_cp32-9, Plasmid ZS7_cp26, Plasmid ZS7_lp25 |
| Borrelia duttonii Ly | Chromosome, Plasmid pl15, Plasmid pl165, Plasmid pl23, Plasmid pl23b, Plasmid pl26, Plasmid pl27, Plasmid pl28, Plasmid pl35, Plasmid pl36, Plasmid pl40, Plasmid pl41, Plasmid pl42, Plasmid pl70, Plasmid pl31, Plasmid pl32, Plasmid pl11 | Chromosome, Plasmid pl15, Plasmid pl165, Plasmid pl23, Plasmid pl23b, Plasmid pl26, Plasmid pl27, Plasmid pl28, Plasmid pl35, Plasmid pl36, Plasmid pl40, Plasmid pl41, Plasmid pl42, Plasmid pl70, Plasmid pl31, Plasmid pl32, Plasmid pl11 | Chromosome, Plasmid pl15, Plasmid pl165, Plasmid pl23, Plasmid pl23b, Plasmid pl26, Plasmid pl27, Plasmid pl28, Plasmid pl35, Plasmid pl36, Plasmid pl40, Plasmid pl41, Plasmid pl42, Plasmid pl70, Plasmid pl31, Plasmid pl32, Plasmid pl11 |
| Borrelia garinii PBi | Chromosome linear, Plasmid cp26, Plasmid lp54 | Chromosome linear, Plasmid cp26, Plasmid lp54 | Chromosome linear, Plasmid cp26, Plasmid lp54 |
| Borrelia hermsii DAH | Plasmid scaffold unnamed, Chromosome, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed | Plasmid scaffold unnamed, Chromosome, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed | Plasmid scaffold unnamed, Chromosome, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed, Plasmid scaffold unnamed |
| Borrelia recurrentis A1 | Chromosome, Plasmid pl23, Plasmid pl33, Plasmid pl35, Plasmid pl37, Plasmid pl53, Plasmid pl6, Plasmid pl124 | Chromosome, Plasmid pl23, Plasmid pl33, Plasmid pl35, Plasmid pl37, Plasmid pl53, Plasmid pl6, Plasmid pl124 | Chromosome, Plasmid pl23, Plasmid pl33, Plasmid pl35, Plasmid pl37, Plasmid pl53, Plasmid pl6, Plasmid pl124 |
| Borrelia turicatae 91E135 | CP000049 | CP000049 | CP000049 |
| Brachybacterium faecium DSM 4810 | CP001643 | CP001643 | CP001643 |
| Brachyspira hyodysenteriae WA1 | Chromosome, Plasmid pBHWA1 | Chromosome, Plasmid pBHWA1 | Chromosome, Plasmid pBHWA1 |
| Brachyspira murdochii DSM 12563 | CP001959 | CP001959 | CP001959 |
| Brachyspira pilosicoli 95/1000 | CP002025 | CP002025 | CP002025 |
| Bradyrhizobium japonicum USDA 110 | BA000040 | BA000040 | BA000040 |
| Bradyrhizobium sp. BTAi1 | Chromosome, Plasmid pBBta01 | Chromosome, Plasmid pBBta01 | Chromosome, Plasmid pBBta01 |
| Bradyrhizobium sp. ORS278 | CU234118 | CU234118 | CU234118 |
| Brevibacillus brevis NBRC 100599 | AP008955 | AP008955 | AP008955 |
| Brevundimonas subvibrioides ATCC 15264 | CP002102 | CP002102 | CP002102 |
| Brucella abortus S19 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Brucella abortus bv. 1 str. 9-941 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Brucella canis ATCC 23365 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Brucella melitensis ATCC 23457 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Brucella melitensis biovar Abortus 2308 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Brucella melitensis bv. 1 str. 16M | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Brucella microti CCM 4915 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Brucella ovis ATCC 25840 | Chromosome II, Chromosome I | Chromosome II, Chromosome I | Chromosome II, Chromosome I |
| Brucella suis 1330 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Brucella suis ATCC 23445 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Buchnera aphidicola str. 5A (Acyrthosiphon pisum) | CP001161 | CP001161 | CP001161 |
| Buchnera aphidicola str. APS (Acyrthosiphon pisum) | Chromosome, Plasmid pLeu, Plasmid pTrp | Chromosome, Plasmid pLeu, Plasmid pTrp | Chromosome, Plasmid pLeu, Plasmid pTrp |
| Buchnera aphidicola str. Bp (Baizongia pistaciae) | Chromosome, Plasmid pBBp1 | Chromosome, Plasmid pBBp1 | Chromosome, Plasmid pBBp1 |
| Buchnera aphidicola str. Cc (Cinara cedri) | Chromosome, Plasmid pLeu-BCc | Chromosome, Plasmid pLeu-BCc | Chromosome, Plasmid pLeu-BCc |
| Buchnera aphidicola str. JF98 (Acyrthosiphon pisum) | CP002303 | CP002303 | CP002303 |
| Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) | CP002302 | CP002302 | CP002302 |
| Buchnera aphidicola str. LL01 (Acyrthosiphon pisum) | CP002300 | CP002300 | CP002300 |
| Buchnera aphidicola str. Sg (Schizaphis graminum) | AE013218 | AE013218 | AE013218 |
| Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum) | CP002301 | CP002301 | CP002301 |
| Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) | CP001158 | CP001158 | CP001158 |
| Burkholderia ambifaria AMMD | Chromosome 1, Plasmid 1, Chromosome 2, Chromosome 3 | Chromosome 1, Plasmid 1, Chromosome 2, Chromosome 3 | Chromosome 1, Plasmid 1, Chromosome 2, Chromosome 3 |
| Burkholderia ambifaria MC40-6 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBMC401 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBMC401 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBMC401 |
| Burkholderia cenocepacia AU 1054 | Chromosome 1, Chromosome 2, Chromosome 3 | Chromosome 1, Chromosome 2, Chromosome 3 | Chromosome 1, Chromosome 2, Chromosome 3 |
| Burkholderia cenocepacia HI2424 | Chromosome 1, Plasmid 1, Chromosome 2, Chromosome 3 | Chromosome 1, Plasmid 1, Chromosome 2, Chromosome 3 | Chromosome 1, Plasmid 1, Chromosome 2, Chromosome 3 |
| Burkholderia cenocepacia J2315 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBCJ2315 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBCJ2315 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBCJ2315 |
| Burkholderia cenocepacia MC0-3 | Chromosome 1, Chromosome 2, Chromosome 3 | Chromosome 1, Chromosome 2, Chromosome 3 | Chromosome 1, Chromosome 2, Chromosome 3 |
| Burkholderia glumae BGR1 | Chromosome 1, Chromosome 2, Plasmid bglu_1p, Plasmid bglu_2p, Plasmid bglu_3p, Plasmid bglu_4p | Chromosome 1, Chromosome 2, Plasmid bglu_1p, Plasmid bglu_2p, Plasmid bglu_3p, Plasmid bglu_4p | Chromosome 1, Chromosome 2, Plasmid bglu_1p, Plasmid bglu_2p, Plasmid bglu_3p, Plasmid bglu_4p |
| Burkholderia mallei ATCC 23344 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Burkholderia mallei NCTC 10229 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Burkholderia mallei NCTC 10247 | Chromosome II, Chromosome I | Chromosome II, Chromosome I | Chromosome II, Chromosome I |
| Burkholderia mallei SAVP1 | Chromosome II, Chromosome I | Chromosome II, Chromosome I | Chromosome II, Chromosome I |
| Burkholderia multivorans ATCC 17616 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBMUL01 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBMUL01 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBMUL01 |
| Burkholderia multivorans ATCC 17616 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pTGL1 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pTGL1 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pTGL1 |
| Burkholderia phymatum STM815 | Chromosome 1, Chromosome 2, Plasmid pBPHY01, Plasmid pBPHY02 | Chromosome 1, Chromosome 2, Plasmid pBPHY01, Plasmid pBPHY02 | Chromosome 1, Chromosome 2, Plasmid pBPHY01, Plasmid pBPHY02 |
| Burkholderia phytofirmans PsJN | Chromosome 1, Chromosome 2, Plasmid pBPHYT01 | Chromosome 1, Chromosome 2, Plasmid pBPHYT01 | Chromosome 1, Chromosome 2, Plasmid pBPHYT01 |
| Burkholderia pseudomallei 1106a | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Burkholderia pseudomallei 1710b | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Burkholderia pseudomallei 668 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Burkholderia pseudomallei K96243 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Burkholderia rhizoxinica HKI 454 | Chromosome ANONYMOUS, Chromosome ANONYMOUS | Chromosome ANONYMOUS, Chromosome ANONYMOUS | Chromosome ANONYMOUS, Chromosome ANONYMOUS |
| Burkholderia sp. 383 | Chromosome 1, Chromosome 2, Chromosome 3 | Chromosome 1, Chromosome 2, Chromosome 3 | Chromosome 1, Chromosome 2, Chromosome 3 |
| Burkholderia sp. CCGE1001 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Burkholderia sp. CCGE1002 | Plasmid pBC201, Chromosome 1, Chromosome 2, Chromosome 3 | Plasmid pBC201, Chromosome 1, Chromosome 2, Chromosome 3 | Plasmid pBC201, Chromosome 1, Chromosome 2, Chromosome 3 |
| Burkholderia sp. CCGE1003 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Burkholderia thailandensis E264 | Chromosome II, Chromosome I | Chromosome II, Chromosome I | Chromosome II, Chromosome I |
| Burkholderia vietnamiensis G4 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBVIE03, Plasmid pBVIE01, Plasmid pBVIE04, Plasmid pBVIE05, Plasmid pBVIE02 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBVIE03, Plasmid pBVIE01, Plasmid pBVIE04, Plasmid pBVIE05, Plasmid pBVIE02 | Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBVIE03, Plasmid pBVIE01, Plasmid pBVIE04, Plasmid pBVIE05, Plasmid pBVIE02 |
| Burkholderia xenovorans LB400 | Chromosome 1, Chromosome 2, Chromosome 3 | Chromosome 1, Chromosome 2, Chromosome 3 | Chromosome 1, Chromosome 2, Chromosome 3 |
| Butyrivibrio fibrisolvens | FP929036 | FP929036 | FP929036 |
| Butyrivibrio proteoclasticus B316 | Chromosome 1, Plasmid pCY360, Plasmid pCY186, Chromosome 2 | Chromosome 1, Plasmid pCY360, Plasmid pCY186, Chromosome 2 | Chromosome 1, Plasmid pCY360, Plasmid pCY186, Chromosome 2 |
| Caldicellulosiruptor bescii DSM 6725 | Chromosome, Plasmid pATHE02, Plasmid pATHE01 | Chromosome, Plasmid pATHE02, Plasmid pATHE01 | Chromosome, Plasmid pATHE02, Plasmid pATHE01 |
| Caldicellulosiruptor hydrothermalis 108 | CP002219 | CP002219 | CP002219 |
| Caldicellulosiruptor kristjanssonii 177R1B | Chromosome, Plasmid pCALKR01 | Chromosome, Plasmid pCALKR01 | Chromosome, Plasmid pCALKR01 |
| Caldicellulosiruptor kronotskyensis 2002 | CP002330 | CP002330 | CP002330 |
| Caldicellulosiruptor obsidiansis OB47 | CP002164 | CP002164 | CP002164 |
| Caldicellulosiruptor owensensis OL | CP002216 | CP002216 | CP002216 |
| Caldicellulosiruptor saccharolyticus DSM 8903 | CP000679 | CP000679 | CP000679 |
| Calditerrivibrio nitroreducens DSM 19672 | Chromosome, Plasmid pCALNI01 | Chromosome, Plasmid pCALNI01 | Chromosome, Plasmid pCALNI01 |
| Caldivirga maquilingensis IC-167 | CP000852 | CP000852 | CP000852 |
| Campylobacter concisus 13826 | Chromosome, Plasmid pCCON16, Plasmid pCCON31 | Chromosome, Plasmid pCCON16, Plasmid pCCON31 | Chromosome, Plasmid pCCON16, Plasmid pCCON31 |
| Campylobacter curvus 525.92 | CP000767 | CP000767 | CP000767 |
| Campylobacter fetus subsp. fetus 82-40 | CP000487 | CP000487 | CP000487 |
| Campylobacter hominis ATCC BAA-381 | Chromosome, Plasmid pCH4 | Chromosome, Plasmid pCH4 | Chromosome, Plasmid pCH4 |
| Campylobacter jejuni RM1221 | CP000025 | CP000025 | CP000025 |
| Campylobacter jejuni subsp. doylei 269.97 | CP000768 | CP000768 | CP000768 |
| Campylobacter jejuni subsp. jejuni 81-176 | Chromosome, Plasmid pTet, Plasmid pVir | Chromosome, Plasmid pTet, Plasmid pVir | Chromosome, Plasmid pTet, Plasmid pVir |
| Campylobacter jejuni subsp. jejuni 81116 | CP000814 | CP000814 | CP000814 |
| Campylobacter jejuni subsp. jejuni IA3902 | Chromosome, Plasmid pVir | Chromosome, Plasmid pVir | Chromosome, Plasmid pVir |
| Campylobacter jejuni subsp. jejuni ICDCCJ07001 | Chromosome, Plasmid pTet | Chromosome, Plasmid pTet | Chromosome, Plasmid pTet |
| Campylobacter jejuni subsp. jejuni M1 | CP001900 | CP001900 | CP001900 |
| Campylobacter jejuni subsp. jejuni NCTC 11168 | AL111168 | AL111168 | AL111168 |
| Campylobacter jejuni subsp. jejuni S3 | Chromosome, Plasmid pTet | Chromosome, Plasmid pTet | Chromosome, Plasmid pTet |
| Campylobacter lari RM2100 | Chromosome, Megaplasmid pCL2100 | Chromosome, Megaplasmid pCL2100 | Chromosome, Megaplasmid pCL2100 |
| Candidatus Accumulibacter phosphatis clade IIA str. UW-1 | Chromosome, Plasmid pAph02, Plasmid pAph01, Plasmid pAph03 | Chromosome, Plasmid pAph02, Plasmid pAph01, Plasmid pAph03 | Chromosome, Plasmid pAph02, Plasmid pAph01, Plasmid pAph03 |
| Candidatus Amoebophilus asiaticus 5a2 | CP001102 | CP001102 | CP001102 |
| Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 | Chromosome, Plasmid pCFPG3, Plasmid pCFPG4, Plasmid pCFPG1, Plasmid pCFPG2 | Chromosome, Plasmid pCFPG3, Plasmid pCFPG4, Plasmid pCFPG1, Plasmid pCFPG2 | Chromosome, Plasmid pCFPG3, Plasmid pCFPG4, Plasmid pCFPG1, Plasmid pCFPG2 |
| Candidatus Blochmannia floridanus | BX248583 | BX248583 | BX248583 |
| Candidatus Blochmannia pennsylvanicus str. BPEN | CP000016 | CP000016 | CP000016 |
| Candidatus Blochmannia vafer str. BVAF | CP002189 | CP002189 | CP002189 |
| Candidatus Carsonella ruddii PV | AP009180 | AP009180 | AP009180 |
| Candidatus Desulforudis audaxviator MP104C | CP000860 | CP000860 | CP000860 |
| Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) | Chromosome, Plasmid pHD5AT | Chromosome, Plasmid pHD5AT | Chromosome, Plasmid pHD5AT |
| Candidatus Hodgkinia cicadicola Dsem | CP001226 | CP001226 | CP001226 |
| Candidatus Korarchaeum cryptofilum OPF8 | CP000968 | CP000968 | CP000968 |
| Candidatus Koribacter versatilis Ellin345 | CP000360 | CP000360 | CP000360 |
| Candidatus Liberibacter asiaticus str. psy62 | CP001677 | CP001677 | CP001677 |
| Candidatus Liberibacter solanacearum CLso-ZC1 | CP002371 | CP002371 | CP002371 |
| Candidatus Nitrospira defluvii | FP929003 | FP929003 | FP929003 |
| Candidatus Pelagibacter ubique HTCC1062 | CP000084 | CP000084 | CP000084 |
| Candidatus Phytoplasma australiense | AM422018 | AM422018 | AM422018 |
| Candidatus Phytoplasma mali | CU469464 | CU469464 | CU469464 |
| Candidatus Protochlamydia amoebophila UWE25 | BX908798 | BX908798 | BX908798 |
| Candidatus Puniceispirillum marinum IMCC1322 | CP001751 | CP001751 | CP001751 |
| Candidatus Riesia pediculicola USDA | Chromosome, Plasmid pPAN | Chromosome, Plasmid pPAN | Chromosome, Plasmid pPAN |
| Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) | CP000488 | CP000488 | CP000488 |
| Candidatus Solibacter usitatus Ellin6076 | CP000473 | CP000473 | CP000473 |
| Candidatus Sulcia muelleri CARI | CP002163 | CP002163 | CP002163 |
| Candidatus Sulcia muelleri DMIN | CP001981 | CP001981 | CP001981 |
| Candidatus Sulcia muelleri GWSS | CP000770 | CP000770 | CP000770 |
| Candidatus Sulcia muelleri SMDSEM | CP001605 | CP001605 | CP001605 |
| Candidatus Vesicomyosocius okutanii HA | AP009247 | AP009247 | AP009247 |
| Candidatus Zinderia insecticola CARI | CP002161 | CP002161 | CP002161 |
| Capnocytophaga ochracea DSM 7271 | CP001632 | CP001632 | CP001632 |
| Carboxydothermus hydrogenoformans Z-2901 | CP000141 | CP000141 | CP000141 |
| Catenulispora acidiphila DSM 44928 | CP001700 | CP001700 | CP001700 |
| Caulobacter crescentus CB15 | AE005673 | AE005673 | AE005673 |
| Caulobacter crescentus NA1000 | CP001340 | CP001340 | CP001340 |
| Caulobacter segnis ATCC 21756 | CP002008 | CP002008 | CP002008 |
| Caulobacter sp. K31 | Chromosome, Plasmid pCAUL01, Plasmid pCAUL02 | Chromosome, Plasmid pCAUL01, Plasmid pCAUL02 | Chromosome, Plasmid pCAUL01, Plasmid pCAUL02 |
| Cellulomonas flavigena DSM 20109 | CP001964 | CP001964 | CP001964 |
| Cellulophaga algicola DSM 14237 | CP002453 | CP002453 | CP002453 |
| Cellulophaga lytica DSM 7489 | CP002534 | CP002534 | CP002534 |
| Cellvibrio japonicus Ueda107 | CP000934 | CP000934 | CP000934 |
| Chelativorans sp. BNC1 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 |
| Chitinophaga pinensis DSM 2588 | CP001699 | CP001699 | CP001699 |
| Chlamydia muridarum Nigg | Chromosome, Plasmid pMoPn | Chromosome, Plasmid pMoPn | Chromosome, Plasmid pMoPn |
| Chlamydia trachomatis 434/Bu | AM884176 | AM884176 | AM884176 |
| Chlamydia trachomatis A/HAR-13 | Chromosome, Plasmid pCTA | Chromosome, Plasmid pCTA | Chromosome, Plasmid pCTA |
| Chlamydia trachomatis B/Jali20/OT | FM872308 | FM872308 | FM872308 |
| Chlamydia trachomatis B/TZ1A828/OT | FM872307 | FM872307 | FM872307 |
| Chlamydia trachomatis D-EC | Chromosome, Plasmid pCTDEC1 | Chromosome, Plasmid pCTDEC1 | Chromosome, Plasmid pCTDEC1 |
| Chlamydia trachomatis D-LC | Chromosome, Plasmid pCTDLC1 | Chromosome, Plasmid pCTDLC1 | Chromosome, Plasmid pCTDLC1 |
| Chlamydia trachomatis D/UW-3/CX | AE001273 | AE001273 | AE001273 |
| Chlamydia trachomatis E/11023 | CP001890 | CP001890 | CP001890 |
| Chlamydia trachomatis E/150 | CP001886 | CP001886 | CP001886 |
| Chlamydia trachomatis G/11074 | CP001889 | CP001889 | CP001889 |
| Chlamydia trachomatis G/11222 | CP001888 | CP001888 | CP001888 |
| Chlamydia trachomatis G/9301 | CP001930 | CP001930 | CP001930 |
| Chlamydia trachomatis G/9768 | CP001887 | CP001887 | CP001887 |
| Chlamydia trachomatis L2b/UCH-1/proctitis | AM884177 | AM884177 | AM884177 |
| Chlamydia trachomatis Sweden2 | FN652779 | FN652779 | FN652779 |
| Chlamydophila abortus S26/3 | CR848038 | CR848038 | CR848038 |
| Chlamydophila caviae GPIC | Chromosome, Plasmid pCpGP1 | Chromosome, Plasmid pCpGP1 | Chromosome, Plasmid pCpGP1 |
| Chlamydophila felis Fe/C-56 | Chromosome, Plasmid pCfe1 | Chromosome, Plasmid pCfe1 | Chromosome, Plasmid pCfe1 |
| Chlamydophila pneumoniae AR39 | Circular ssDNA, Chromosome | Circular ssDNA, Chromosome | Circular ssDNA, Chromosome |
| Chlamydophila pneumoniae CWL029 | AE001363 | AE001363 | AE001363 |
| Chlamydophila pneumoniae J138 | BA000008 | BA000008 | BA000008 |
| Chlamydophila pneumoniae LPCoLN | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Chlamydophila pneumoniae TW-183 | AE009440 | AE009440 | AE009440 |
| Chlorobaculum parvum NCIB 8327 | CP001099 | CP001099 | CP001099 |
| Chlorobium chlorochromatii CaD3 | CP000108 | CP000108 | CP000108 |
| Chlorobium limicola DSM 245 | CP001097 | CP001097 | CP001097 |
| Chlorobium luteolum DSM 273 | CP000096 | CP000096 | CP000096 |
| Chlorobium phaeobacteroides BS1 | CP001101 | CP001101 | CP001101 |
| Chlorobium phaeobacteroides DSM 266 | CP000492 | CP000492 | CP000492 |
| Chlorobium phaeovibrioides DSM 265 | CP000607 | CP000607 | CP000607 |
| Chlorobium tepidum TLS | AE006470 | AE006470 | AE006470 |
| Chloroflexus aggregans DSM 9485 | CP001337 | CP001337 | CP001337 |
| Chloroflexus aurantiacus J-10-fl | CP000909 | CP000909 | CP000909 |
| Chloroflexus sp. Y-400-fl | CP001364 | CP001364 | CP001364 |
| Chloroherpeton thalassium ATCC 35110 | CP001100 | CP001100 | CP001100 |
| Chromobacterium violaceum ATCC 12472 | AE016825 | AE016825 | AE016825 |
| Chromohalobacter salexigens DSM 3043 | CP000285 | CP000285 | CP000285 |
| Citrobacter koseri ATCC BAA-895 | Chromosome, Plasmid pCKO2, Plasmid pCKO3 | Chromosome, Plasmid pCKO2, Plasmid pCKO3 | Chromosome, Plasmid pCKO2, Plasmid pCKO3 |
| Citrobacter rodentium ICC168 | Chromosome, Plasmid pCROD2, Plasmid pCROD3, Plasmid pCROD1 | Chromosome, Plasmid pCROD2, Plasmid pCROD3, Plasmid pCROD1 | Chromosome, Plasmid pCROD2, Plasmid pCROD3, Plasmid pCROD1 |
| Clavibacter michiganensis subsp. michiganensis NCPPB 382 | Chromosome, Plasmid pCM1, Plasmid pCM2 | Chromosome, Plasmid pCM1, Plasmid pCM2 | Chromosome, Plasmid pCM1, Plasmid pCM2 |
| Clavibacter michiganensis subsp. sepedonicus | Chromosome, Plasmid pCSL1, Plasmid pCS1 | Chromosome, Plasmid pCSL1, Plasmid pCS1 | Chromosome, Plasmid pCSL1, Plasmid pCS1 |
| Clostridiales genomosp. BVAB3 str. UPII9-5 | CP001850 | CP001850 | CP001850 |
| Clostridium acetobutylicum ATCC 824 | Chromosome, Plasmid pSOL1 | Chromosome, Plasmid pSOL1 | Chromosome, Plasmid pSOL1 |
| Clostridium beijerinckii NCIMB 8052 | CP000721 | CP000721 | CP000721 |
| Clostridium botulinum A str. ATCC 19397 | CP000726 | CP000726 | CP000726 |
| Clostridium botulinum A str. ATCC 3502 | Chromosome, Plasmid pBOT3502 | Chromosome, Plasmid pBOT3502 | Chromosome, Plasmid pBOT3502 |
| Clostridium botulinum A str. Hall | CP000727 | CP000727 | CP000727 |
| Clostridium botulinum A2 str. Kyoto | CP001581 | CP001581 | CP001581 |
| Clostridium botulinum A3 str. Loch Maree | Chromosome, Plasmid pCLK | Chromosome, Plasmid pCLK | Chromosome, Plasmid pCLK |
| Clostridium botulinum B str. Eklund 17B | Chromosome, Plasmid pCLL | Chromosome, Plasmid pCLL | Chromosome, Plasmid pCLL |
| Clostridium botulinum B1 str. Okra | Chromosome, Plasmid pCLD | Chromosome, Plasmid pCLD | Chromosome, Plasmid pCLD |
| Clostridium botulinum Ba4 str. 657 | Chromosome, Plasmid pCLJ2, Plasmid pCLJ | Chromosome, Plasmid pCLJ2, Plasmid pCLJ | Chromosome, Plasmid pCLJ2, Plasmid pCLJ |
| Clostridium botulinum E3 str. Alaska E43 | CP001078 | CP001078 | CP001078 |
| Clostridium botulinum F str. 230613 | Chromosome, Plasmid pCBF | Chromosome, Plasmid pCBF | Chromosome, Plasmid pCBF |
| Clostridium botulinum F str. Langeland | Chromosome, Plasmid pCLI | Chromosome, Plasmid pCLI | Chromosome, Plasmid pCLI |
| Clostridium cellulolyticum H10 | CP001348 | CP001348 | CP001348 |
| Clostridium cellulovorans 743B | CP002160 | CP002160 | CP002160 |
| Clostridium cf. saccharolyticum K10 | FP929037 | FP929037 | FP929037 |
| Clostridium difficile 2007855 | FN665654 | FN665654 | FN665654 |
| Clostridium difficile 630 | Chromosome, Plasmid pCD630 | Chromosome, Plasmid pCD630 | Chromosome, Plasmid pCD630 |
| Clostridium difficile BI1 | Plasmid, Plasmid pCDBI1, Chromosome ANONYMOUS | Plasmid, Plasmid pCDBI1, Chromosome ANONYMOUS | Plasmid, Plasmid pCDBI1, Chromosome ANONYMOUS |
| Clostridium difficile CD196 | FN538970 | FN538970 | FN538970 |
| Clostridium difficile CF5 | FN665652 | FN665652 | FN665652 |
| Clostridium difficile M120 | FN665653 | FN665653 | FN665653 |
| Clostridium difficile M68 | FN668375 | FN668375 | FN668375 |
| Clostridium difficile R20291 | FN545816 | FN545816 | FN545816 |
| Clostridium kluyveri DSM 555 | Chromosome, Plasmid pCKL555A | Chromosome, Plasmid pCKL555A | Chromosome, Plasmid pCKL555A |
| Clostridium kluyveri NBRC 12016 | Chromosome, Plasmid pCKL1 | Chromosome, Plasmid pCKL1 | Chromosome, Plasmid pCKL1 |
| Clostridium ljungdahlii DSM 13528 | CP001666 | CP001666 | CP001666 |
| Clostridium novyi NT | CP000382 | CP000382 | CP000382 |
| Clostridium perfringens ATCC 13124 | CP000246 | CP000246 | CP000246 |
| Clostridium perfringens SM101 | Chromosome, Plasmid pSM101B, Circular DNA, Plasmid pSM101A | Chromosome, Plasmid pSM101B, Circular DNA, Plasmid pSM101A | Chromosome, Plasmid pSM101B, Circular DNA, Plasmid pSM101A |
| Clostridium perfringens str. 13 | Chromosome, Plasmid pCP13 | Chromosome, Plasmid pCP13 | Chromosome, Plasmid pCP13 |
| Clostridium phytofermentans ISDg | CP000885 | CP000885 | CP000885 |
| Clostridium saccharolyticum WM1 | CP002109 | CP002109 | CP002109 |
| Clostridium sticklandii DSM 519 | FP565809 | FP565809 | FP565809 |
| Clostridium tetani E88 | Chromosome, Plasmid pE88 | Chromosome, Plasmid pE88 | Chromosome, Plasmid pE88 |
| Clostridium thermocellum ATCC 27405 | CP000568 | CP000568 | CP000568 |
| Clostridium thermocellum DSM 1313 | CP002416 | CP002416 | CP002416 |
| Colwellia psychrerythraea 34H | CP000083 | CP000083 | CP000083 |
| Comamonas testosteroni CNB-1 | Chromosome, Plasmid pCNB | Chromosome, Plasmid pCNB | Chromosome, Plasmid pCNB |
| Conexibacter woesei DSM 14684 | CP001854 | CP001854 | CP001854 |
| Coprococcus catus GD/7 | FP929038 | FP929038 | FP929038 |
| Coprococcus sp. ART55/1 | FP929039 | FP929039 | FP929039 |
| Coprothermobacter proteolyticus DSM 5265 | CP001145 | CP001145 | CP001145 |
| Coraliomargarita akajimensis DSM 45221 | CP001998 | CP001998 | CP001998 |
| Corynebacterium aurimucosum ATCC 700975 | Chromosome, Plasmid pET44827 | Chromosome, Plasmid pET44827 | Chromosome, Plasmid pET44827 |
| Corynebacterium diphtheriae NCTC 13129 | BX248353 | BX248353 | BX248353 |
| Corynebacterium efficiens YS-314 | Plasmid pCE3, Chromosome, Plasmid pCE2 | Plasmid pCE3, Chromosome, Plasmid pCE2 | Plasmid pCE3, Chromosome, Plasmid pCE2 |
| Corynebacterium glutamicum ATCC 13032 | BA000036 | BA000036 | BA000036 |
| Corynebacterium glutamicum ATCC 13032 | BX927147 | BX927147 | BX927147 |
| Corynebacterium glutamicum R | Chromosome, Plasmid pCGR1 | Chromosome, Plasmid pCGR1 | Chromosome, Plasmid pCGR1 |
| Corynebacterium jeikeium K411 | Chromosome, Plasmid pKW4 | Chromosome, Plasmid pKW4 | Chromosome, Plasmid pKW4 |
| Corynebacterium kroppenstedtii DSM 44385 | CP001620 | CP001620 | CP001620 |
| Corynebacterium pseudotuberculosis 1002 | CP001809 | CP001809 | CP001809 |
| Corynebacterium pseudotuberculosis C231 | CP001829 | CP001829 | CP001829 |
| Corynebacterium pseudotuberculosis FRC41 | CP002097 | CP002097 | CP002097 |
| Corynebacterium pseudotuberculosis I19 | CP002251 | CP002251 | CP002251 |
| Corynebacterium urealyticum DSM 7109 | AM942444 | AM942444 | AM942444 |
| Coxiella burnetii CbuG_Q212 | CP001019 | CP001019 | CP001019 |
| Coxiella burnetii CbuK_Q154 | Chromosome, Plasmid pQpRS_K_Q154 | Chromosome, Plasmid pQpRS_K_Q154 | Chromosome, Plasmid pQpRS_K_Q154 |
| Coxiella burnetii Dugway 5J108-111 | Chromosome, Plasmid pQpDG | Chromosome, Plasmid pQpDG | Chromosome, Plasmid pQpDG |
| Coxiella burnetii RSA 331 | Chromosome, Plasmid QpH1 | Chromosome, Plasmid QpH1 | Chromosome, Plasmid QpH1 |
| Coxiella burnetii RSA 493 | Chromosome, Plasmid pQpH1 | Chromosome, Plasmid pQpH1 | Chromosome, Plasmid pQpH1 |
| Croceibacter atlanticus HTCC2559 | CP002046 | CP002046 | CP002046 |
| Cronobacter sakazakii ATCC BAA-894 | Chromosome, Plasmid pESA3, Plasmid pESA2 | Chromosome, Plasmid pESA3, Plasmid pESA2 | Chromosome, Plasmid pESA3, Plasmid pESA2 |
| Cronobacter turicensis z3032 | Chromosome, Plasmid pCTU3, Plasmid pCTU2, Plasmid pCTU1 | Chromosome, Plasmid pCTU3, Plasmid pCTU2, Plasmid pCTU1 | Chromosome, Plasmid pCTU3, Plasmid pCTU2, Plasmid pCTU1 |
| Cryptobacterium curtum DSM 15641 | CP001682 | CP001682 | CP001682 |
| Cupriavidus metallidurans CH34 | Chromosome, Megaplasmid, Plasmid pMOL30, Plasmid pMOL28 | Chromosome, Megaplasmid, Plasmid pMOL30, Plasmid pMOL28 | Chromosome, Megaplasmid, Plasmid pMOL30, Plasmid pMOL28 |
| Cupriavidus taiwanensis | Chromosome 1, Chromosome 2, Plasmid pRALTA | Chromosome 1, Chromosome 2, Plasmid pRALTA | Chromosome 1, Chromosome 2, Plasmid pRALTA |
| Cyanothece sp. ATCC 51142 | Chromosome circular, Plasmid C, Plasmid D, Plasmid A, Chromosome linear, Plasmid B | Chromosome circular, Plasmid C, Plasmid D, Plasmid A, Chromosome linear, Plasmid B | Chromosome circular, Plasmid C, Plasmid D, Plasmid A, Chromosome linear, Plasmid B |
| Cyanothece sp. PCC 7424 | Chromosome, Plasmid pP742402, Plasmid pP742403, Plasmid pP742404, Plasmid pP742405, Plasmid pP742406, Plasmid pP742401 | Chromosome, Plasmid pP742402, Plasmid pP742403, Plasmid pP742404, Plasmid pP742405, Plasmid pP742406, Plasmid pP742401 | Chromosome, Plasmid pP742402, Plasmid pP742403, Plasmid pP742404, Plasmid pP742405, Plasmid pP742406, Plasmid pP742401 |
| Cyanothece sp. PCC 7425 | Chromosome, Plasmid pP742502, Plasmid pP742503, Plasmid pP742501 | Chromosome, Plasmid pP742502, Plasmid pP742503, Plasmid pP742501 | Chromosome, Plasmid pP742502, Plasmid pP742503, Plasmid pP742501 |
| Cyanothece sp. PCC 7822 | Chromosome, Plasmid Cy782201, Plasmid Cy782204, Plasmid Cy782202, Plasmid Cy782205, Plasmid Cy782206, Plasmid Cy782203 | Chromosome, Plasmid Cy782201, Plasmid Cy782204, Plasmid Cy782202, Plasmid Cy782205, Plasmid Cy782206, Plasmid Cy782203 | Chromosome, Plasmid Cy782201, Plasmid Cy782204, Plasmid Cy782202, Plasmid Cy782205, Plasmid Cy782206, Plasmid Cy782203 |
| Cyanothece sp. PCC 8801 | Chromosome, Plasmid pP880102, Plasmid pP880103, Plasmid pP880101 | Chromosome, Plasmid pP880102, Plasmid pP880103, Plasmid pP880101 | Chromosome, Plasmid pP880102, Plasmid pP880103, Plasmid pP880101 |
| Cyanothece sp. PCC 8802 | Chromosome, Plasmid pP880201, Plasmid pP880203, Plasmid pP880204, Plasmid pP880202 | Chromosome, Plasmid pP880201, Plasmid pP880203, Plasmid pP880204, Plasmid pP880202 | Chromosome, Plasmid pP880201, Plasmid pP880203, Plasmid pP880204, Plasmid pP880202 |
| Cytophaga hutchinsonii ATCC 33406 | CP000383 | CP000383 | CP000383 |
| Dechloromonas aromatica RCB | CP000089 | CP000089 | CP000089 |
| Deferribacter desulfuricans SSM1 | Chromosome, Megaplasmid pDF308 | Chromosome, Megaplasmid pDF308 | Chromosome, Megaplasmid pDF308 |
| Dehalococcoides ethenogenes 195 | CP000027 | CP000027 | CP000027 |
| Dehalococcoides sp. BAV1 | CP000688 | CP000688 | CP000688 |
| Dehalococcoides sp. CBDB1 | AJ965256 | AJ965256 | AJ965256 |
| Dehalococcoides sp. GT | CP001924 | CP001924 | CP001924 |
| Dehalococcoides sp. VS | CP001827 | CP001827 | CP001827 |
| Dehalogenimonas lykanthroporepellens BL-DC-9 | CP002084 | CP002084 | CP002084 |
| Deinococcus deserti VCD115 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 |
| Deinococcus geothermalis DSM 11300 | Chromosome, Plasmid pDGEO02, Plasmid pDGEO01 | Chromosome, Plasmid pDGEO02, Plasmid pDGEO01 | Chromosome, Plasmid pDGEO02, Plasmid pDGEO01 |
| Deinococcus maricopensis DSM 21211 | CP002454 | CP002454 | CP002454 |
| Deinococcus proteolyticus MRP | Chromosome, Plasmid pDEIPR01, Plasmid pDEIPR02, Plasmid pDEIPR03, Plasmid pDEIPR04 | Chromosome, Plasmid pDEIPR01, Plasmid pDEIPR02, Plasmid pDEIPR03, Plasmid pDEIPR04 | Chromosome, Plasmid pDEIPR01, Plasmid pDEIPR02, Plasmid pDEIPR03, Plasmid pDEIPR04 |
| Deinococcus radiodurans R1 | Chromosome 1, Chromosome 2, Plasmid MP1, Plasmid CP1 | Chromosome 1, Chromosome 2, Plasmid MP1, Plasmid CP1 | Chromosome 1, Chromosome 2, Plasmid MP1, Plasmid CP1 |
| Delftia acidovorans SPH-1 | CP000884 | CP000884 | CP000884 |
| Denitrovibrio acetiphilus DSM 12809 | CP001968 | CP001968 | CP001968 |
| Desulfarculus baarsii DSM 2075 | CP002085 | CP002085 | CP002085 |
| Desulfatibacillum alkenivorans AK-01 | CP001322 | CP001322 | CP001322 |
| Desulfitobacterium hafniense DCB-2 | CP001336 | CP001336 | CP001336 |
| Desulfitobacterium hafniense Y51 | AP008230 | AP008230 | AP008230 |
| Desulfobacterium autotrophicum HRM2 | Chromosome, Plasmid pHRM2a | Chromosome, Plasmid pHRM2a | Chromosome, Plasmid pHRM2a |
| Desulfobulbus propionicus DSM 2032 | CP002364 | CP002364 | CP002364 |
| Desulfococcus oleovorans Hxd3 | CP000859 | CP000859 | CP000859 |
| Desulfohalobium retbaense DSM 5692 | Chromosome, Plasmid pDRET01 | Chromosome, Plasmid pDRET01 | Chromosome, Plasmid pDRET01 |
| Desulfomicrobium baculatum DSM 4028 | CP001629 | CP001629 | CP001629 |
| Desulfotalea psychrophila LSv54 | Chromosome, Plasmid large, Plasmid small | Chromosome, Plasmid large, Plasmid small | Chromosome, Plasmid large, Plasmid small |
| Desulfotomaculum acetoxidans DSM 771 | CP001720 | CP001720 | CP001720 |
| Desulfotomaculum reducens MI-1 | CP000612 | CP000612 | CP000612 |
| Desulfovibrio aespoeensis Aspo-2 | CP002431 | CP002431 | CP002431 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | CP001358 | CP001358 | CP001358 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. G20 | CP000112 | CP000112 | CP000112 |
| Desulfovibrio magneticus RS-1 | Chromosome, Plasmid pDMC1, Plasmid pDMC2 | Chromosome, Plasmid pDMC1, Plasmid pDMC2 | Chromosome, Plasmid pDMC1, Plasmid pDMC2 |
| Desulfovibrio salexigens DSM 2638 | CP001649 | CP001649 | CP001649 |
| Desulfovibrio vulgaris DP4 | Chromosome, Plasmid pDVUL01 | Chromosome, Plasmid pDVUL01 | Chromosome, Plasmid pDVUL01 |
| Desulfovibrio vulgaris RCH1 | Chromosome, Plasmid pDEVAL01 | Chromosome, Plasmid pDEVAL01 | Chromosome, Plasmid pDEVAL01 |
| Desulfovibrio vulgaris str. 'Miyazaki F' | CP001197 | CP001197 | CP001197 |
| Desulfovibrio vulgaris str. Hildenborough | Chromosome, Plasmid pDV | Chromosome, Plasmid pDV | Chromosome, Plasmid pDV |
| Desulfurispirillum indicum S5 | CP002432 | CP002432 | CP002432 |
| Desulfurivibrio alkaliphilus AHT2 | CP001940 | CP001940 | CP001940 |
| Desulfurobacterium thermolithotrophum DSM 11699 | CP002543 | CP002543 | CP002543 |
| Desulfurococcus kamchatkensis 1221n | CP001140 | CP001140 | CP001140 |
| Desulfurococcus mucosus DSM 2162 | CP002363 | CP002363 | CP002363 |
| Dichelobacter nodosus VCS1703A | CP000513 | CP000513 | CP000513 |
| Dickeya dadantii 3937 | CP002038 | CP002038 | CP002038 |
| Dickeya dadantii Ech586 | CP001836 | CP001836 | CP001836 |
| Dickeya dadantii Ech703 | CP001654 | CP001654 | CP001654 |
| Dickeya zeae Ech1591 | CP001655 | CP001655 | CP001655 |
| Dictyoglomus thermophilum H-6-12 | CP001146 | CP001146 | CP001146 |
| Dictyoglomus turgidum DSM 6724 | CP001251 | CP001251 | CP001251 |
| Dinoroseobacter shibae DFL 12 | Chromosome, Plasmid pDSHI02, Plasmid pDSHI03, Plasmid pDSHI04, Plasmid pDSHI05, Plasmid pDSHI01 | Chromosome, Plasmid pDSHI02, Plasmid pDSHI03, Plasmid pDSHI04, Plasmid pDSHI05, Plasmid pDSHI01 | Chromosome, Plasmid pDSHI02, Plasmid pDSHI03, Plasmid pDSHI04, Plasmid pDSHI05, Plasmid pDSHI01 |
| Dyadobacter fermentans DSM 18053 | CP001619 | CP001619 | CP001619 |
| Edwardsiella ictaluri 93-146 | CP001600 | CP001600 | CP001600 |
| Edwardsiella tarda EIB202 | Chromosome, Plasmid pEIB202 | Chromosome, Plasmid pEIB202 | Chromosome, Plasmid pEIB202 |
| Edwardsiella tarda FL6-60 | Chromosome, Plasmid pFL6-60 | Chromosome, Plasmid pFL6-60 | Chromosome, Plasmid pFL6-60 |
| Eggerthella lenta DSM 2243 | CP001726 | CP001726 | CP001726 |
| Ehrlichia canis str. Jake | CP000107 | CP000107 | CP000107 |
| Ehrlichia chaffeensis str. Arkansas | CP000236 | CP000236 | CP000236 |
| Ehrlichia ruminantium str. Gardel | CR925677 | CR925677 | CR925677 |
| Ehrlichia ruminantium str. Welgevonden | CR767821 | CR767821 | CR767821 |
| Ehrlichia ruminantium str. Welgevonden | CR925678 | CR925678 | CR925678 |
| Elusimicrobium minutum Pei191 | CP001055 | CP001055 | CP001055 |
| Enterobacter cloacae SCF1 | CP002272 | CP002272 | CP002272 |
| Enterobacter cloacae subsp. cloacae ATCC 13047 | Chromosome, Plasmid pECL_A, Plasmid pECL_B | Chromosome, Plasmid pECL_A, Plasmid pECL_B | Chromosome, Plasmid pECL_A, Plasmid pECL_B |
| Enterobacter cloacae subsp. cloacae NCTC 9394 | FP929040 | FP929040 | FP929040 |
| Enterobacter sp. 638 | Chromosome, Plasmid pENTE01 | Chromosome, Plasmid pENTE01 | Chromosome, Plasmid pENTE01 |
| Enterococcus faecalis 62 | Chromosome, Plasmid EF62pA, Plasmid EF62pB, Plasmid EF62pC | Chromosome, Plasmid EF62pA, Plasmid EF62pB, Plasmid EF62pC | Chromosome, Plasmid EF62pA, Plasmid EF62pB, Plasmid EF62pC |
| Enterococcus faecalis V583 | Chromosome, Plasmid pTEF1, Plasmid pTEF2, Plasmid pTEF3 | Chromosome, Plasmid pTEF1, Plasmid pTEF2, Plasmid pTEF3 | Chromosome, Plasmid pTEF1, Plasmid pTEF2, Plasmid pTEF3 |
| Enterococcus sp. 7L76 | FP929058 | FP929058 | FP929058 |
| Erwinia amylovora ATCC 49946 | Plasmid 1, Plasmid 2, Chromosome | Plasmid 1, Plasmid 2, Chromosome | Plasmid 1, Plasmid 2, Chromosome |
| Erwinia amylovora CFBP1430 | Chromosome, Plasmid pEA29 | Chromosome, Plasmid pEA29 | Chromosome, Plasmid pEA29 |
| Erwinia billingiae Eb661 | Chromosome ANONYMOUS, Plasmid pEB170, Plasmid pEB102 | Chromosome ANONYMOUS, Plasmid pEB170, Plasmid pEB102 | Chromosome ANONYMOUS, Plasmid pEB170, Plasmid pEB102 |
| Erwinia pyrifoliae DSM 12163 | Chromosome, Plasmid pEP3, Plasmid pEP36, Plasmid pEp5, Plasmid pEP2.6 | Chromosome, Plasmid pEP3, Plasmid pEP36, Plasmid pEp5, Plasmid pEP2.6 | Chromosome, Plasmid pEP3, Plasmid pEP36, Plasmid pEp5, Plasmid pEP2.6 |
| Erwinia pyrifoliae Ep1/96 | Chromosome, Plasmid pEP05, Plasmid pEP03, Plasmid pEP2.6, Plasmid pEP36 | Chromosome, Plasmid pEP05, Plasmid pEP03, Plasmid pEP2.6, Plasmid pEP36 | Chromosome, Plasmid pEP05, Plasmid pEP03, Plasmid pEP2.6, Plasmid pEP36 |
| Erwinia sp. Ejp617 | Chromosome, Plasmid pJE01, Plasmid pJE02, Plasmid pJE03, Plasmid pJE04, Plasmid pJE05 | Chromosome, Plasmid pJE01, Plasmid pJE02, Plasmid pJE03, Plasmid pJE04, Plasmid pJE05 | Chromosome, Plasmid pJE01, Plasmid pJE02, Plasmid pJE03, Plasmid pJE04, Plasmid pJE05 |
| Erwinia tasmaniensis Et1/99 | Chromosome, Plasmid pET09, Plasmid pET35, Plasmid pET49, Plasmid pET45, Plasmid pET46 | Chromosome, Plasmid pET09, Plasmid pET35, Plasmid pET49, Plasmid pET45, Plasmid pET46 | Chromosome, Plasmid pET09, Plasmid pET35, Plasmid pET49, Plasmid pET45, Plasmid pET46 |
| Erythrobacter litoralis HTCC2594 | CP000157 | CP000157 | CP000157 |
| Escherichia coli 'BL21-Gold(DE3)pLysS AG' | CP001665 | CP001665 | CP001665 |
| Escherichia coli 042 | Chromosome, Plasmid pAA | Chromosome, Plasmid pAA | Chromosome, Plasmid pAA |
| Escherichia coli 536 | CP000247 | CP000247 | CP000247 |
| Escherichia coli 55989 | CU928145 | CU928145 | CU928145 |
| Escherichia coli ABU 83972 | Chromosome, Plasmid pABU | Chromosome, Plasmid pABU | Chromosome, Plasmid pABU |
| Escherichia coli APEC O1 | Chromosome, Plasmid pAPEC-O1-R, Plasmid pAPEC-O1-ColBM | Chromosome, Plasmid pAPEC-O1-R, Plasmid pAPEC-O1-ColBM | Chromosome, Plasmid pAPEC-O1-R, Plasmid pAPEC-O1-ColBM |
| Escherichia coli ATCC 8739 | CP000946 | CP000946 | CP000946 |
| Escherichia coli B str. REL606 | CP000819 | CP000819 | CP000819 |
| Escherichia coli BL21(DE3) | CP001509 | CP001509 | CP001509 |
| Escherichia coli BL21(DE3) | AM946981 | AM946981 | AM946981 |
| Escherichia coli BW2952 | CP001396 | CP001396 | CP001396 |
| Escherichia coli CFT073 | AE014075 | AE014075 | AE014075 |
| Escherichia coli DH1 | CP001637 | CP001637 | CP001637 |
| Escherichia coli E24377A | Chromosome, Plasmid pETEC_35, Plasmid pETEC_73, Plasmid pETEC_6, Plasmid pETEC_74, Plasmid pETEC_5, Plasmid pETEC_80 | Chromosome, Plasmid pETEC_35, Plasmid pETEC_73, Plasmid pETEC_6, Plasmid pETEC_74, Plasmid pETEC_5, Plasmid pETEC_80 | Chromosome, Plasmid pETEC_35, Plasmid pETEC_73, Plasmid pETEC_6, Plasmid pETEC_74, Plasmid pETEC_5, Plasmid pETEC_80 |
| Escherichia coli ED1a | CU928162 | CU928162 | CU928162 |
| Escherichia coli ETEC H10407 | FN649414 | FN649414 | FN649414 |
| Escherichia coli HS | CP000802 | CP000802 | CP000802 |
| Escherichia coli IAI1 | CU928160 | CU928160 | CU928160 |
| Escherichia coli IAI39 | CU928164 | CU928164 | CU928164 |
| Escherichia coli IHE3034 | CP001969 | CP001969 | CP001969 |
| Escherichia coli KO11 | Chromosome, Plasmid pEKO1101, Plasmid pEKO1102 | Chromosome, Plasmid pEKO1101, Plasmid pEKO1102 | Chromosome, Plasmid pEKO1101, Plasmid pEKO1102 |
| Escherichia coli O103:H2 str. 12009 | Chromosome, Plasmid pO103 | Chromosome, Plasmid pO103 | Chromosome, Plasmid pO103 |
| Escherichia coli O111:H- str. 11128 | Chromosome, Plasmid pO111_3, Plasmid pO111_4, Plasmid pO111_5, Plasmid pO111_2, Plasmid pO111_1 | Chromosome, Plasmid pO111_3, Plasmid pO111_4, Plasmid pO111_5, Plasmid pO111_2, Plasmid pO111_1 | Chromosome, Plasmid pO111_3, Plasmid pO111_4, Plasmid pO111_5, Plasmid pO111_2, Plasmid pO111_1 |
| Escherichia coli O127:H6 str. E2348/69 | Chromosome, Plasmid pMAR2, Plasmid pE2348-2 | Chromosome, Plasmid pMAR2, Plasmid pE2348-2 | Chromosome, Plasmid pMAR2, Plasmid pE2348-2 |
| Escherichia coli O157:H7 str. EC4115 | Chromosome, Plasmid pEC4115, Plasmid pO157 | Chromosome, Plasmid pEC4115, Plasmid pO157 | Chromosome, Plasmid pEC4115, Plasmid pO157 |
| Escherichia coli O157:H7 str. EDL933 | Chromosome, Plasmid pO157 | Chromosome, Plasmid pO157 | Chromosome, Plasmid pO157 |
| Escherichia coli O157:H7 str. Sakai | Chromosome, Plasmid pO157, Plasmid pOSAK1 | Chromosome, Plasmid pO157, Plasmid pOSAK1 | Chromosome, Plasmid pO157, Plasmid pOSAK1 |
| Escherichia coli O157:H7 str. TW14359 | Chromosome, Plasmid pO157 | Chromosome, Plasmid pO157 | Chromosome, Plasmid pO157 |
| Escherichia coli O26:H11 str. 11368 | Chromosome, Plasmid pO26_2, Plasmid pO26_3, Plasmid pO26_1, Plasmid pO26_4 | Chromosome, Plasmid pO26_2, Plasmid pO26_3, Plasmid pO26_1, Plasmid pO26_4 | Chromosome, Plasmid pO26_2, Plasmid pO26_3, Plasmid pO26_1, Plasmid pO26_4 |
| Escherichia coli O55:H7 str. CB9615 | Chromosome, Plasmid pO55 | Chromosome, Plasmid pO55 | Chromosome, Plasmid pO55 |
| Escherichia coli O83:H1 str. NRG 857C | Chromosome, Plasmid pO83_CORR | Chromosome, Plasmid pO83_CORR | Chromosome, Plasmid pO83_CORR |
| Escherichia coli RS218 | CP000711 | CP000711 | CP000711 |
| Escherichia coli S88 | Chromosome, Plasmid pECOS88 | Chromosome, Plasmid pECOS88 | Chromosome, Plasmid pECOS88 |
| Escherichia coli SE11 | Chromosome, Plasmid pSE11-5, Plasmid pSE11-6, Plasmid pSE11-2, Plasmid pSE11-3, Plasmid pSE11-1, Plasmid pSE11-4 | Chromosome, Plasmid pSE11-5, Plasmid pSE11-6, Plasmid pSE11-2, Plasmid pSE11-3, Plasmid pSE11-1, Plasmid pSE11-4 | Chromosome, Plasmid pSE11-5, Plasmid pSE11-6, Plasmid pSE11-2, Plasmid pSE11-3, Plasmid pSE11-1, Plasmid pSE11-4 |
| Escherichia coli SE15 | Chromosome, Plasmid pECSF1 | Chromosome, Plasmid pECSF1 | Chromosome, Plasmid pECSF1 |
| Escherichia coli SMS-3-5 | Chromosome, Plasmid pSMS35_4, Plasmid pSMS35_3, Plasmid pSMS35_130, Plasmid pSMS35_8 | Chromosome, Plasmid pSMS35_4, Plasmid pSMS35_3, Plasmid pSMS35_130, Plasmid pSMS35_8 | Chromosome, Plasmid pSMS35_4, Plasmid pSMS35_3, Plasmid pSMS35_130, Plasmid pSMS35_8 |
| Escherichia coli UM146 | Chromosome, Plasmid pUM146 | Chromosome, Plasmid pUM146 | Chromosome, Plasmid pUM146 |
| Escherichia coli UMN026 | Chromosome, Plasmid p1ESCUM, Plasmid p2ESCUM | Chromosome, Plasmid p1ESCUM, Plasmid p2ESCUM | Chromosome, Plasmid p1ESCUM, Plasmid p2ESCUM |
| Escherichia coli UTI89 | Chromosome, Plasmid pUTI89 | Chromosome, Plasmid pUTI89 | Chromosome, Plasmid pUTI89 |
| Escherichia coli W | Chromosome, Plasmid pRK1, Plasmid pRK2 | Chromosome, Plasmid pRK1, Plasmid pRK2 | Chromosome, Plasmid pRK1, Plasmid pRK2 |
| Escherichia coli str. K-12 substr. DH10B | CP000948 | CP000948 | CP000948 |
| Escherichia coli str. K-12 substr. MG1655 | U00096 | U00096 | U00096 |
| Escherichia coli str. K-12 substr. W3110 | AP009048 | AP009048 | AP009048 |
| Escherichia fergusonii ATCC 35469 | Chromosome, Plasmid pEFER | Chromosome, Plasmid pEFER | Chromosome, Plasmid pEFER |
| Ethanoligenens harbinense YUAN-3 | CP002400 | CP002400 | CP002400 |
| Eubacterium cylindroides T2-87 | FP929041 | FP929041 | FP929041 |
| Eubacterium eligens ATCC 27750 | Chromosome, Plasmid unnamed, Plasmid unnamed | Chromosome, Plasmid unnamed, Plasmid unnamed | Chromosome, Plasmid unnamed, Plasmid unnamed |
| Eubacterium limosum KIST612 | CP002273 | CP002273 | CP002273 |
| Eubacterium rectale | FP929042 | FP929042 | FP929042 |
| Eubacterium rectale | FP929043 | FP929043 | FP929043 |
| Eubacterium rectale ATCC 33656 | CP001107 | CP001107 | CP001107 |
| Eubacterium siraeum | FP929044 | FP929044 | FP929044 |
| Eubacterium siraeum V10Sc8a | FP929059 | FP929059 | FP929059 |
| Exiguobacterium sibiricum 255-15 | Chromosome, Plasmid pEXIG02, Plasmid pEXIG01 | Chromosome, Plasmid pEXIG02, Plasmid pEXIG01 | Chromosome, Plasmid pEXIG02, Plasmid pEXIG01 |
| Exiguobacterium sp. AT1b | CP001615 | CP001615 | CP001615 |
| Faecalibacterium prausnitzii | FP929046 | FP929046 | FP929046 |
| Faecalibacterium prausnitzii L2-6 | FP929045 | FP929045 | FP929045 |
| Ferrimonas balearica DSM 9799 | CP002209 | CP002209 | CP002209 |
| Ferroglobus placidus DSM 10642 | CP001899 | CP001899 | CP001899 |
| Fervidobacterium nodosum Rt17-B1 | CP000771 | CP000771 | CP000771 |
| Fibrobacter succinogenes subsp. succinogenes S85 | CP002158 | CP002158 | CP002158 |
| Fibrobacter succinogenes subsp. succinogenes S85 | CP001792 | CP001792 | CP001792 |
| Filifactor alocis ATCC 35896 | CP002390 | CP002390 | CP002390 |
| Finegoldia magna ATCC 29328 | Chromosome, Plasmid pFMC | Chromosome, Plasmid pFMC | Chromosome, Plasmid pFMC |
| Flavobacteriaceae bacterium 3519-10 | CP001673 | CP001673 | CP001673 |
| Flavobacterium johnsoniae UW101 | CP000685 | CP000685 | CP000685 |
| Flavobacterium psychrophilum JIP02/86 | AM398681 | AM398681 | AM398681 |
| Francisella novicida U112 | CP000439 | CP000439 | CP000439 |
| Francisella philomiragia subsp. philomiragia ATCC 25017 | Chromosome, Plasmid pFPHI01 | Chromosome, Plasmid pFPHI01 | Chromosome, Plasmid pFPHI01 |
| Francisella tularensis subsp. holarctica FTNF002-00 | CP000803 | CP000803 | CP000803 |
| Francisella tularensis subsp. holarctica LVS | AM233362 | AM233362 | AM233362 |
| Francisella tularensis subsp. holarctica OSU18 | CP000437 | CP000437 | CP000437 |
| Francisella tularensis subsp. mediasiatica FSC147 | CP000915 | CP000915 | CP000915 |
| Francisella tularensis subsp. tularensis FSC198 | AM286280 | AM286280 | AM286280 |
| Francisella tularensis subsp. tularensis NE061598 | CP001633 | CP001633 | CP001633 |
| Francisella tularensis subsp. tularensis SCHU S4 | AJ749949 | AJ749949 | AJ749949 |
| Francisella tularensis subsp. tularensis WY96-3418 | CP000608 | CP000608 | CP000608 |
| Frankia alni ACN14a | CT573213 | CT573213 | CT573213 |
| Frankia sp. CcI3 | CP000249 | CP000249 | CP000249 |
| Frankia sp. EAN1pec | CP000820 | CP000820 | CP000820 |
| Frankia sp. EuI1c | CP002299 | CP002299 | CP002299 |
| Fusobacterium nucleatum subsp. nucleatum ATCC 25586 | AE009951 | AE009951 | AE009951 |
| Gallionella capsiferriformans ES-2 | CP002159 | CP002159 | CP002159 |
| Gardnerella vaginalis 409-05 | CP001849 | CP001849 | CP001849 |
| Gardnerella vaginalis ATCC 14019 | CP002104 | CP002104 | CP002104 |
| Gemmatimonas aurantiaca T-27 | AP009153 | AP009153 | AP009153 |
| Geobacillus kaustophilus HTA426 | Chromosome, Plasmid pHTA426 | Chromosome, Plasmid pHTA426 | Chromosome, Plasmid pHTA426 |
| Geobacillus sp. C56-T3 | CP002050 | CP002050 | CP002050 |
| Geobacillus sp. WCH70 | Chromosome, Plasmid pWCH7002, Plasmid pWCH7001 | Chromosome, Plasmid pWCH7002, Plasmid pWCH7001 | Chromosome, Plasmid pWCH7002, Plasmid pWCH7001 |
| Geobacillus sp. Y4.1MC1 | Chromosome, Plasmid pGY4MC101 | Chromosome, Plasmid pGY4MC101 | Chromosome, Plasmid pGY4MC101 |
| Geobacillus sp. Y412MC52 | Chromosome, Plasmid pGYMC5201 | Chromosome, Plasmid pGYMC5201 | Chromosome, Plasmid pGYMC5201 |
| Geobacillus sp. Y412MC61 | Chromosome, Plasmid pGYMC6101 | Chromosome, Plasmid pGYMC6101 | Chromosome, Plasmid pGYMC6101 |
| Geobacillus thermodenitrificans NG80-2 | Chromosome, Plasmid pLW1071 | Chromosome, Plasmid pLW1071 | Chromosome, Plasmid pLW1071 |
| Geobacter bemidjiensis Bem | CP001124 | CP001124 | CP001124 |
| Geobacter lovleyi SZ | Chromosome, Plasmid pGLOV01 | Chromosome, Plasmid pGLOV01 | Chromosome, Plasmid pGLOV01 |
| Geobacter metallireducens GS-15 | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Geobacter sp. FRC-32 | CP001390 | CP001390 | CP001390 |
| Geobacter sp. M18 | CP002479 | CP002479 | CP002479 |
| Geobacter sp. M21 | CP001661 | CP001661 | CP001661 |
| Geobacter sulfurreducens KN400 | CP002031 | CP002031 | CP002031 |
| Geobacter sulfurreducens PCA | AE017180 | AE017180 | AE017180 |
| Geobacter uraniireducens Rf4 | CP000698 | CP000698 | CP000698 |
| Geodermatophilus obscurus DSM 43160 | CP001867 | CP001867 | CP001867 |
| Gloeobacter violaceus PCC 7421 | BA000045 | BA000045 | BA000045 |
| Gluconacetobacter diazotrophicus PAl 5 | Chromosome, Plasmid pGDIPal5II, Plasmid pGDIPal5I | Chromosome, Plasmid pGDIPal5II, Plasmid pGDIPal5I | Chromosome, Plasmid pGDIPal5II, Plasmid pGDIPal5I |
| Gluconacetobacter diazotrophicus PAl 5 | Chromosome, Plasmid pGDIA01 | Chromosome, Plasmid pGDIA01 | Chromosome, Plasmid pGDIA01 |
| Gluconobacter oxydans 621H | Chromosome, Plasmid pGOX1, Plasmid pGOX2, Plasmid pGOX3, Plasmid pGOX4, Plasmid pGOX5 | Chromosome, Plasmid pGOX1, Plasmid pGOX2, Plasmid pGOX3, Plasmid pGOX4, Plasmid pGOX5 | Chromosome, Plasmid pGOX1, Plasmid pGOX2, Plasmid pGOX3, Plasmid pGOX4, Plasmid pGOX5 |
| Gordonia bronchialis DSM 43247 | Chromosome, Plasmid pGBRO01 | Chromosome, Plasmid pGBRO01 | Chromosome, Plasmid pGBRO01 |
| Gordonibacter pamelaeae 7-10-1-b | FP929047 | FP929047 | FP929047 |
| Gramella forsetii KT0803 | CU207366 | CU207366 | CU207366 |
| Granulibacter bethesdensis CGDNIH1 | CP000394 | CP000394 | CP000394 |
| Haemophilus ducreyi 35000HP | AE017143 | AE017143 | AE017143 |
| Haemophilus influenzae 10810 | FQ312006 | FQ312006 | FQ312006 |
| Haemophilus influenzae 86-028NP | CP000057 | CP000057 | CP000057 |
| Haemophilus influenzae F3031 | FQ670178 | FQ670178 | FQ670178 |
| Haemophilus influenzae F3047 | FQ670204 | FQ670204 | FQ670204 |
| Haemophilus influenzae PittEE | CP000671 | CP000671 | CP000671 |
| Haemophilus influenzae PittGG | CP000672 | CP000672 | CP000672 |
| Haemophilus influenzae R2846 | CP002276 | CP002276 | CP002276 |
| Haemophilus influenzae R2866 | CP002277 | CP002277 | CP002277 |
| Haemophilus influenzae Rd KW20 | L42023 | L42023 | L42023 |
| Haemophilus parainfluenzae T3T1 | FQ312002 | FQ312002 | FQ312002 |
| Haemophilus parasuis SH0165 | CP001321 | CP001321 | CP001321 |
| Haemophilus somnus 129PT | Chromosome, Plasmid pHS129 | Chromosome, Plasmid pHS129 | Chromosome, Plasmid pHS129 |
| Haemophilus somnus 2336 | CP000947 | CP000947 | CP000947 |
| Hahella chejuensis KCTC 2396 | CP000155 | CP000155 | CP000155 |
| Halalkalicoccus jeotgali B3 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3, Plasmid 4, Plasmid 5, Plasmid 6 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3, Plasmid 4, Plasmid 5, Plasmid 6 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3, Plasmid 4, Plasmid 5, Plasmid 6 |
| Halanaerobium praevalens DSM 2228 | CP002175 | CP002175 | CP002175 |
| Halanaerobium sp. 'sapolanicus' | CP002304 | CP002304 | CP002304 |
| Haliangium ochraceum DSM 14365 | CP001804 | CP001804 | CP001804 |
| Haloarcula marismortui ATCC 43049 | Chromosome I, Chromosome II, Plasmid pNG100, Plasmid pNG200, Plasmid pNG300, Plasmid pNG400, Plasmid pNG500, Plasmid pNG600, Plasmid pNG700 | Chromosome I, Chromosome II, Plasmid pNG100, Plasmid pNG200, Plasmid pNG300, Plasmid pNG400, Plasmid pNG500, Plasmid pNG600, Plasmid pNG700 | Chromosome I, Chromosome II, Plasmid pNG100, Plasmid pNG200, Plasmid pNG300, Plasmid pNG400, Plasmid pNG500, Plasmid pNG600, Plasmid pNG700 |
| Halobacterium salinarum R1 | Chromosome, Plasmid PHS1, Plasmid PHS2, Plasmid PHS3, Plasmid PHS4 | Chromosome, Plasmid PHS1, Plasmid PHS2, Plasmid PHS3, Plasmid PHS4 | Chromosome, Plasmid PHS1, Plasmid PHS2, Plasmid PHS3, Plasmid PHS4 |
| Halobacterium sp. NRC-1 | Chromosome, Plasmid pNRC200, Plasmid pNRC100 | Chromosome, Plasmid pNRC200, Plasmid pNRC100 | Chromosome, Plasmid pNRC200, Plasmid pNRC100 |
| Haloferax volcanii DS2 | Plasmid pHV2, Plasmid pHV4, Plasmid pHV1, Plasmid pHV3, Chromosome | Plasmid pHV2, Plasmid pHV4, Plasmid pHV1, Plasmid pHV3, Chromosome | Plasmid pHV2, Plasmid pHV4, Plasmid pHV1, Plasmid pHV3, Chromosome |
| Halogeometricum borinquense DSM 11551 | Chromosome, Plasmid pHBOR01, Plasmid pHBOR02, Plasmid pHBOR03, Plasmid pHBOR04, Plasmid pHBOR05 | Chromosome, Plasmid pHBOR01, Plasmid pHBOR02, Plasmid pHBOR03, Plasmid pHBOR04, Plasmid pHBOR05 | Chromosome, Plasmid pHBOR01, Plasmid pHBOR02, Plasmid pHBOR03, Plasmid pHBOR04, Plasmid pHBOR05 |
| Halomicrobium mukohataei DSM 12286 | Chromosome, Plasmid pHmuk01 | Chromosome, Plasmid pHmuk01 | Chromosome, Plasmid pHmuk01 |
| Halomonas elongata DSM 2581 | FN869568 | FN869568 | FN869568 |
| Haloquadratum walsbyi DSM 16790 | Chromosome, Plasmid PL47 | Chromosome, Plasmid PL47 | Chromosome, Plasmid PL47 |
| Halorhabdus utahensis DSM 12940 | CP001687 | CP001687 | CP001687 |
| Halorhodospira halophila SL1 | CP000544 | CP000544 | CP000544 |
| Halorubrum lacusprofundi ATCC 49239 | Chromosome 1, Chromosome 2, Plasmid pHLAC01 | Chromosome 1, Chromosome 2, Plasmid pHLAC01 | Chromosome 1, Chromosome 2, Plasmid pHLAC01 |
| Haloterrigena turkmenica DSM 5511 | Chromosome, Plasmid pHTUR02, Plasmid pHTUR03, Plasmid pHTUR04, Plasmid pHTUR05, Plasmid pHTUR06, Plasmid pHTUR01 | Chromosome, Plasmid pHTUR02, Plasmid pHTUR03, Plasmid pHTUR04, Plasmid pHTUR05, Plasmid pHTUR06, Plasmid pHTUR01 | Chromosome, Plasmid pHTUR02, Plasmid pHTUR03, Plasmid pHTUR04, Plasmid pHTUR05, Plasmid pHTUR06, Plasmid pHTUR01 |
| Halothermothrix orenii H 168 | CP001098 | CP001098 | CP001098 |
| Halothiobacillus neapolitanus c2 | CP001801 | CP001801 | CP001801 |
| Helicobacter acinonychis str. Sheeba | Chromosome, Plasmid pHac1 | Chromosome, Plasmid pHac1 | Chromosome, Plasmid pHac1 |
| Helicobacter felis ATCC 49179 | FQ670179 | FQ670179 | FQ670179 |
| Helicobacter hepaticus ATCC 51449 | AE017125 | AE017125 | AE017125 |
| Helicobacter mustelae 12198 | FN555004 | FN555004 | FN555004 |
| Helicobacter pylori | CP001680 | CP001680 | CP001680 |
| Helicobacter pylori 26695 | AE000511 | AE000511 | AE000511 |
| Helicobacter pylori 35A | CP002096 | CP002096 | CP002096 |
| Helicobacter pylori 51 | CP000012 | CP000012 | CP000012 |
| Helicobacter pylori 908 | CP002184 | CP002184 | CP002184 |
| Helicobacter pylori B38 | FM991728 | FM991728 | FM991728 |
| Helicobacter pylori B8 | Chromosome, Plasmid HPB8p | Chromosome, Plasmid HPB8p | Chromosome, Plasmid HPB8p |
| Helicobacter pylori Cuz20 | CP002076 | CP002076 | CP002076 |
| Helicobacter pylori G27 | Chromosome, Plasmid pHPG27 | Chromosome, Plasmid pHPG27 | Chromosome, Plasmid pHPG27 |
| Helicobacter pylori Gambia94/24 | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Helicobacter pylori HPAG1 | Chromosome, Plasmid pHPAG1 | Chromosome, Plasmid pHPAG1 | Chromosome, Plasmid pHPAG1 |
| Helicobacter pylori India7 | CP002331 | CP002331 | CP002331 |
| Helicobacter pylori J99 | AE001439 | AE001439 | AE001439 |
| Helicobacter pylori Lithuania75 | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Helicobacter pylori P12 | Chromosome, Plasmid HPP12 | Chromosome, Plasmid HPP12 | Chromosome, Plasmid HPP12 |
| Helicobacter pylori PeCan4 | Chromosome, Plasmid pHPPC4 | Chromosome, Plasmid pHPPC4 | Chromosome, Plasmid pHPPC4 |
| Helicobacter pylori SJM180 | CP002073 | CP002073 | CP002073 |
| Helicobacter pylori Sat464 | Chromosome, Plasmid pHPSAT464 | Chromosome, Plasmid pHPSAT464 | Chromosome, Plasmid pHPSAT464 |
| Helicobacter pylori Shi470 | CP001072 | CP001072 | CP001072 |
| Helicobacter pylori SouthAfrica7 | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Helicobacter pylori v225d | Chromosome, Plasmid pHPv225d | Chromosome, Plasmid pHPv225d | Chromosome, Plasmid pHPv225d |
| Heliobacterium modesticaldum Ice1 | CP000930 | CP000930 | CP000930 |
| Herbaspirillum seropedicae SmR1 | CP002039 | CP002039 | CP002039 |
| Herminiimonas arsenicoxydans | CU207211 | CU207211 | CU207211 |
| Herpetosiphon aurantiacus ATCC 23779 | Chromosome, Plasmid pHAU02, Plasmid pHAU01 | Chromosome, Plasmid pHAU02, Plasmid pHAU01 | Chromosome, Plasmid pHAU02, Plasmid pHAU01 |
| Hirschia baltica ATCC 49814 | Chromosome, Plasmid pHbal01 | Chromosome, Plasmid pHbal01 | Chromosome, Plasmid pHbal01 |
| Hydrogenobacter thermophilus TK-6 | AP011112 | AP011112 | AP011112 |
| Hydrogenobacter thermophilus TK-6 | CP002221 | CP002221 | CP002221 |
| Hydrogenobaculum sp. Y04AAS1 | CP001130 | CP001130 | CP001130 |
| Hyperthermus butylicus DSM 5456 | CP000493 | CP000493 | CP000493 |
| Hyphomicrobium denitrificans ATCC 51888 | CP002083 | CP002083 | CP002083 |
| Hyphomonas neptunium ATCC 15444 | CP000158 | CP000158 | CP000158 |
| Idiomarina loihiensis L2TR | AE017340 | AE017340 | AE017340 |
| Ignicoccus hospitalis KIN4/I | CP000816 | CP000816 | CP000816 |
| Ignisphaera aggregans DSM 17230 | CP002098 | CP002098 | CP002098 |
| Ilyobacter polytropus DSM 2926 | Chromosome, Plasmid pILYOP01, Plasmid pILYOP02 | Chromosome, Plasmid pILYOP01, Plasmid pILYOP02 | Chromosome, Plasmid pILYOP01, Plasmid pILYOP02 |
| Intrasporangium calvum DSM 43043 | CP002343 | CP002343 | CP002343 |
| Isosphaera pallida ATCC 43644 | Chromosome, Plasmid pISOP01 | Chromosome, Plasmid pISOP01 | Chromosome, Plasmid pISOP01 |
| Jannaschia sp. CCS1 | Chromosome, Plasmid1 | Chromosome, Plasmid1 | Chromosome, Plasmid1 |
| Janthinobacterium sp. Marseille | CP000269 | CP000269 | CP000269 |
| Jonesia denitrificans DSM 20603 | CP001706 | CP001706 | CP001706 |
| Kangiella koreensis DSM 16069 | CP001707 | CP001707 | CP001707 |
| Ketogulonicigenium vulgare Y25 | Chromosome, Plasmid pYP1, Plasmid pYP12 | Chromosome, Plasmid pYP1, Plasmid pYP12 | Chromosome, Plasmid pYP1, Plasmid pYP12 |
| Kineococcus radiotolerans SRS30216 | Chromosome, Plasmid pKRAD01, Plasmid pKRAD02 | Chromosome, Plasmid pKRAD01, Plasmid pKRAD02 | Chromosome, Plasmid pKRAD01, Plasmid pKRAD02 |
| Klebsiella pneumoniae 342 | Chromosome, Plasmid pKP91, Plasmid pKP187 | Chromosome, Plasmid pKP91, Plasmid pKP187 | Chromosome, Plasmid pKP91, Plasmid pKP187 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | Chromosome, Plasmid pKPN4, Plasmid pKPN5, Plasmid pKPN6, Plasmid pKPN7, Plasmid pKPN3 | Chromosome, Plasmid pKPN4, Plasmid pKPN5, Plasmid pKPN6, Plasmid pKPN7, Plasmid pKPN3 | Chromosome, Plasmid pKPN4, Plasmid pKPN5, Plasmid pKPN6, Plasmid pKPN7, Plasmid pKPN3 |
| Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 | Chromosome, Plasmid pK2044 | Chromosome, Plasmid pK2044 | Chromosome, Plasmid pK2044 |
| Klebsiella variicola At-22 | CP001891 | CP001891 | CP001891 |
| Kocuria rhizophila DC2201 | AP009152 | AP009152 | AP009152 |
| Kosmotoga olearia TBF 19.5.1 | CP001634 | CP001634 | CP001634 |
| Kribbella flavida DSM 17836 | CP001736 | CP001736 | CP001736 |
| Kytococcus sedentarius DSM 20547 | CP001686 | CP001686 | CP001686 |
| Lactobacillus acidophilus NCFM | CP000033 | CP000033 | CP000033 |
| Lactobacillus amylovorus GRL 1112 | CP002338 | CP002338 | CP002338 |
| Lactobacillus brevis ATCC 367 | Chromosome, Plasmid 1, Plasmid 2 | Chromosome, Plasmid 1, Plasmid 2 | Chromosome, Plasmid 1, Plasmid 2 |
| Lactobacillus casei ATCC 334 | Chromosome, Plasmid 1 | Chromosome, Plasmid 1 | Chromosome, Plasmid 1 |
| Lactobacillus casei BL23 | FM177140 | FM177140 | FM177140 |
| Lactobacillus casei str. Zhang | Chromosome, Plasmid plca36 | Chromosome, Plasmid plca36 | Chromosome, Plasmid plca36 |
| Lactobacillus crispatus ST1 | FN692037 | FN692037 | FN692037 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 | CR954253 | CR954253 | CR954253 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | CP000412 | CP000412 | CP000412 |
| Lactobacillus delbrueckii subsp. bulgaricus ND02 | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Lactobacillus fermentum CECT 5716 | CP002033 | CP002033 | CP002033 |
| Lactobacillus fermentum IFO 3956 | AP008937 | AP008937 | AP008937 |
| Lactobacillus gasseri ATCC 33323 | CP000413 | CP000413 | CP000413 |
| Lactobacillus helveticus DPC 4571 | CP000517 | CP000517 | CP000517 |
| Lactobacillus helveticus H10 | Chromosome, Plasmid pH10 | Chromosome, Plasmid pH10 | Chromosome, Plasmid pH10 |
| Lactobacillus johnsonii FI9785 | Chromosome, Plasmid p9785L, Plasmid p9785S | Chromosome, Plasmid p9785L, Plasmid p9785S | Chromosome, Plasmid p9785L, Plasmid p9785S |
| Lactobacillus johnsonii NCC 533 | AE017198 | AE017198 | AE017198 |
| Lactobacillus plantarum JDM1 | CP001617 | CP001617 | CP001617 |
| Lactobacillus plantarum WCFS1 | Chromosome, Plasmid pWCFS101, Plasmid pWCFS102, Plasmid pWCFS103 | Chromosome, Plasmid pWCFS101, Plasmid pWCFS102, Plasmid pWCFS103 | Chromosome, Plasmid pWCFS101, Plasmid pWCFS102, Plasmid pWCFS103 |
| Lactobacillus plantarum subsp. plantarum ST-III | Chromosome, Plasmid pST-III | Chromosome, Plasmid pST-III | Chromosome, Plasmid pST-III |
| Lactobacillus reuteri DSM 20016 | CP000705 | CP000705 | CP000705 |
| Lactobacillus reuteri JCM 1112 | AP007281 | AP007281 | AP007281 |
| Lactobacillus rhamnosus GG | FM179322 | FM179322 | FM179322 |
| Lactobacillus rhamnosus GG | AP011548 | AP011548 | AP011548 |
| Lactobacillus rhamnosus Lc 705 | Chromosome, Plasmid pLC1 | Chromosome, Plasmid pLC1 | Chromosome, Plasmid pLC1 |
| Lactobacillus sakei subsp. sakei 23K | CR936503 | CR936503 | CR936503 |
| Lactobacillus salivarius CECT 5713 | Chromosome, Plasmid pHN1, Plasmid pHN2, Plasmid pHN3 | Chromosome, Plasmid pHN1, Plasmid pHN2, Plasmid pHN3 | Chromosome, Plasmid pHN1, Plasmid pHN2, Plasmid pHN3 |
| Lactobacillus salivarius UCC118 | Chromosome, Plasmid pSF118-44, Plasmid pMP118, Plasmid pSF118-20 | Chromosome, Plasmid pSF118-44, Plasmid pMP118, Plasmid pSF118-20 | Chromosome, Plasmid pSF118-44, Plasmid pMP118, Plasmid pSF118-20 |
| Lactococcus lactis subsp. cremoris MG1363 | AM406671 | AM406671 | AM406671 |
| Lactococcus lactis subsp. cremoris NZ9000 | CP002094 | CP002094 | CP002094 |
| Lactococcus lactis subsp. cremoris SK11 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3, Plasmid 4, Plasmid 5 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3, Plasmid 4, Plasmid 5 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3, Plasmid 4, Plasmid 5 |
| Lactococcus lactis subsp. lactis Il1403 | AE005176 | AE005176 | AE005176 |
| Lactococcus lactis subsp. lactis KF147 | Chromosome, Plasmid pKF147A | Chromosome, Plasmid pKF147A | Chromosome, Plasmid pKF147A |
| Laribacter hongkongensis HLHK9 | CP001154 | CP001154 | CP001154 |
| Lawsonia intracellularis PHE/MN1-00 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 |
| Leadbetterella byssophila DSM 17132 | CP002305 | CP002305 | CP002305 |
| Legionella longbeachae NSW150 | Chromosome, Plasmid pLLO | Chromosome, Plasmid pLLO | Chromosome, Plasmid pLLO |
| Legionella pneumophila 130b | FR687201 | FR687201 | FR687201 |
| Legionella pneumophila 2300/99 Alcoy | CP001828 | CP001828 | CP001828 |
| Legionella pneumophila str. Corby | CP000675 | CP000675 | CP000675 |
| Legionella pneumophila str. Lens | Chromosome, Plasmid pLPL | Chromosome, Plasmid pLPL | Chromosome, Plasmid pLPL |
| Legionella pneumophila str. Paris | Chromosome, Plasmid pLPP | Chromosome, Plasmid pLPP | Chromosome, Plasmid pLPP |
| Legionella pneumophila subsp. pneumophila str. Philadelphia 1 | AE017354 | AE017354 | AE017354 |
| Leifsonia xyli subsp. xyli str. CTCB07 | AE016822 | AE016822 | AE016822 |
| Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' | Chromosome I, Chromosome II, Plasmid p74 | Chromosome I, Chromosome II, Plasmid p74 | Chromosome I, Chromosome II, Plasmid p74 |
| Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' | Chromosome I, Chromosome II, Plasmid p74 | Chromosome I, Chromosome II, Plasmid p74 | Chromosome I, Chromosome II, Plasmid p74 |
| Leptospira borgpetersenii serovar Hardjo-bovis JB197 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Leptospira borgpetersenii serovar Hardjo-bovis L550 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Leptospira interrogans serovar Lai str. 56601 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Leptothrix cholodnii SP-6 | CP001013 | CP001013 | CP001013 |
| Leptotrichia buccalis C-1013-b | CP001685 | CP001685 | CP001685 |
| Leuconostoc citreum KM20 | Chromosome, Plasmid pLCK3, Plasmid pLCK4, Plasmid pLCK1, Plasmid pLCK2 | Chromosome, Plasmid pLCK3, Plasmid pLCK4, Plasmid pLCK1, Plasmid pLCK2 | Chromosome, Plasmid pLCK3, Plasmid pLCK4, Plasmid pLCK1, Plasmid pLCK2 |
| Leuconostoc gasicomitatum LMG 18811 | FN822744 | FN822744 | FN822744 |
| Leuconostoc kimchii IMSNU 11154 | Chromosome, Plasmid LkipL4701, Plasmid LkipL4704, Plasmid LkipL4719, Plasmid LkipL4726, Plasmid LkipL48 | Chromosome, Plasmid LkipL4701, Plasmid LkipL4704, Plasmid LkipL4719, Plasmid LkipL4726, Plasmid LkipL48 | Chromosome, Plasmid LkipL4701, Plasmid LkipL4704, Plasmid LkipL4719, Plasmid LkipL4726, Plasmid LkipL48 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | Chromosome, Plasmid pLEUM1 | Chromosome, Plasmid pLEUM1 | Chromosome, Plasmid pLEUM1 |
| Listeria innocua Clip11262 | Chromosome, Plasmid pLI100 | Chromosome, Plasmid pLI100 | Chromosome, Plasmid pLI100 |
| Listeria monocytogenes | Chromosome, Plasmid pLM5578 | Chromosome, Plasmid pLM5578 | Chromosome, Plasmid pLM5578 |
| Listeria monocytogenes 08-5923 | CP001604 | CP001604 | CP001604 |
| Listeria monocytogenes EGD-e | AL591824 | AL591824 | AL591824 |
| Listeria monocytogenes HCC23 | CP001175 | CP001175 | CP001175 |
| Listeria monocytogenes serotype 4a str. L99 | FM211688 | FM211688 | FM211688 |
| Listeria monocytogenes serotype 4b str. CLIP 80459 | FM242711 | FM242711 | FM242711 |
| Listeria monocytogenes serotype 4b str. F2365 | AE017262 | AE017262 | AE017262 |
| Listeria seeligeri serovar 1/2b str. SLCC3954 | FN557490 | FN557490 | FN557490 |
| Listeria welshimeri serovar 6b str. SLCC5334 | AM263198 | AM263198 | AM263198 |
| Lysinibacillus sphaericus C3-41 | Chromosome, Plasmid pBsph | Chromosome, Plasmid pBsph | Chromosome, Plasmid pBsph |
| Macrococcus caseolyticus JCSC5402 | Chromosome, Plasmid pMCCL2, Plasmid pMCCL1, Plasmid pMCCL3, Plasmid pMCCL4, Plasmid pMCCL5, Plasmid pMCCL6, Plasmid pMCCL7, Plasmid pMCCL8 | Chromosome, Plasmid pMCCL2, Plasmid pMCCL1, Plasmid pMCCL3, Plasmid pMCCL4, Plasmid pMCCL5, Plasmid pMCCL6, Plasmid pMCCL7, Plasmid pMCCL8 | Chromosome, Plasmid pMCCL2, Plasmid pMCCL1, Plasmid pMCCL3, Plasmid pMCCL4, Plasmid pMCCL5, Plasmid pMCCL6, Plasmid pMCCL7, Plasmid pMCCL8 |
| Magnetococcus sp. MC-1 | CP000471 | CP000471 | CP000471 |
| Magnetospirillum magneticum AMB-1 | AP007255 | AP007255 | AP007255 |
| Mannheimia succiniciproducens MBEL55E | AE016827 | AE016827 | AE016827 |
| Maribacter sp. HTCC2170 | CP002157 | CP002157 | CP002157 |
| Maricaulis maris MCS10 | CP000449 | CP000449 | CP000449 |
| Marinobacter aquaeolei VT8 | Chromosome, Plasmid pMAQU02, Plasmid pMAQU01 | Chromosome, Plasmid pMAQU02, Plasmid pMAQU01 | Chromosome, Plasmid pMAQU02, Plasmid pMAQU01 |
| Marinomonas sp. MWYL1 | CP000749 | CP000749 | CP000749 |
| Marivirga tractuosa DSM 4126 | Chromosome, Plasmid pFTRAC01 | Chromosome, Plasmid pFTRAC01 | Chromosome, Plasmid pFTRAC01 |
| Megamonas hypermegale | FP929048 | FP929048 | FP929048 |
| Meiothermus ruber DSM 1279 | CP001743 | CP001743 | CP001743 |
| Meiothermus silvanus DSM 9946 | Chromosome, Plasmid pMESIL01, Plasmid pMESIL02 | Chromosome, Plasmid pMESIL01, Plasmid pMESIL02 | Chromosome, Plasmid pMESIL01, Plasmid pMESIL02 |
| Mesoplasma florum L1 | AE017263 | AE017263 | AE017263 |
| Mesorhizobium ciceri biovar biserrulae WSM1271 | Chromosome, Plasmid pMESCI01 | Chromosome, Plasmid pMESCI01 | Chromosome, Plasmid pMESCI01 |
| Mesorhizobium loti MAFF303099 | Chromosome, Plasmid pMLa, Plasmid pMLb | Chromosome, Plasmid pMLa, Plasmid pMLb | Chromosome, Plasmid pMLa, Plasmid pMLb |
| Metallosphaera sedula DSM 5348 | CP000682 | CP000682 | CP000682 |
| Methanobrevibacter ruminantium M1 | CP001719 | CP001719 | CP001719 |
| Methanobrevibacter smithii ATCC 35061 | CP000678 | CP000678 | CP000678 |
| Methanocaldococcus fervens AG86 | Chromosome, Plasmid pMEFER01 | Chromosome, Plasmid pMEFER01 | Chromosome, Plasmid pMEFER01 |
| Methanocaldococcus infernus ME | CP002009 | CP002009 | CP002009 |
| Methanocaldococcus jannaschii DSM 2661 | Chromosome, Plasmid large ECE, Plasmid small ECE | Chromosome, Plasmid large ECE, Plasmid small ECE | Chromosome, Plasmid large ECE, Plasmid small ECE |
| Methanocaldococcus sp. FS406-22 | Chromosome, Plasmid pFS01 | Chromosome, Plasmid pFS01 | Chromosome, Plasmid pFS01 |
| Methanocaldococcus vulcanius M7 | Chromosome, Plasmid pMETVU02, Plasmid pMETVU01 | Chromosome, Plasmid pMETVU02, Plasmid pMETVU01 | Chromosome, Plasmid pMETVU02, Plasmid pMETVU01 |
| Methanocella paludicola SANAE | AP011532 | AP011532 | AP011532 |
| Methanococcoides burtonii DSM 6242 | CP000300 | CP000300 | CP000300 |
| Methanococcus aeolicus Nankai-3 | CP000743 | CP000743 | CP000743 |
| Methanococcus maripaludis C5 | Chromosome, Plasmid pMMC501 | Chromosome, Plasmid pMMC501 | Chromosome, Plasmid pMMC501 |
| Methanococcus maripaludis C6 | CP000867 | CP000867 | CP000867 |
| Methanococcus maripaludis C7 | CP000745 | CP000745 | CP000745 |
| Methanococcus maripaludis S2 | BX950229 | BX950229 | BX950229 |
| Methanococcus vannielii SB | CP000742 | CP000742 | CP000742 |
| Methanococcus voltae A3 | CP002057 | CP002057 | CP002057 |
| Methanocorpusculum labreanum Z | CP000559 | CP000559 | CP000559 |
| Methanoculleus marisnigri JR1 | CP000562 | CP000562 | CP000562 |
| Methanohalobium evestigatum Z-7303 | Chromosome, Plasmid pMETEV01 | Chromosome, Plasmid pMETEV01 | Chromosome, Plasmid pMETEV01 |
| Methanohalophilus mahii DSM 5219 | CP001994 | CP001994 | CP001994 |
| Methanoplanus petrolearius DSM 11571 | CP002117 | CP002117 | CP002117 |
| Methanopyrus kandleri AV19 | AE009439 | AE009439 | AE009439 |
| Methanoregula boonei 6A8 | CP000780 | CP000780 | CP000780 |
| Methanosaeta thermophila PT | CP000477 | CP000477 | CP000477 |
| Methanosarcina acetivorans C2A | AE010299 | AE010299 | AE010299 |
| Methanosarcina barkeri str. Fusaro | Chromosome, Plasmid 1 | Chromosome, Plasmid 1 | Chromosome, Plasmid 1 |
| Methanosarcina mazei Go1 | AE008384 | AE008384 | AE008384 |
| Methanosphaera stadtmanae DSM 3091 | CP000102 | CP000102 | CP000102 |
| Methanosphaerula palustris E1-9c | CP001338 | CP001338 | CP001338 |
| Methanospirillum hungatei JF-1 | CP000254 | CP000254 | CP000254 |
| Methanothermobacter marburgensis str. Marburg | Chromosome, Plasmid pMTBMA4 | Chromosome, Plasmid pMTBMA4 | Chromosome, Plasmid pMTBMA4 |
| Methanothermobacter thermautotrophicus str. Delta H | AE000666 | AE000666 | AE000666 |
| Methanothermus fervidus DSM 2088 | CP002278 | CP002278 | CP002278 |
| Methylacidiphilum infernorum V4 | CP000975 | CP000975 | CP000975 |
| Methylibium petroleiphilum PM1 | Chromosome, Plasmid RPME01 | Chromosome, Plasmid RPME01 | Chromosome, Plasmid RPME01 |
| Methylobacillus flagellatus KT | CP000284 | CP000284 | CP000284 |
| Methylobacterium chloromethanicum CM4 | Chromosome, Plasmid pMCHL02, Plasmid pMCHL01 | Chromosome, Plasmid pMCHL02, Plasmid pMCHL01 | Chromosome, Plasmid pMCHL02, Plasmid pMCHL01 |
| Methylobacterium extorquens AM1 | Chromosome, Plasmid p1META1, Plasmid p2META1, Plasmid p3META1, Megaplasmid | Chromosome, Plasmid p1META1, Plasmid p2META1, Plasmid p3META1, Megaplasmid | Chromosome, Plasmid p1META1, Plasmid p2META1, Plasmid p3META1, Megaplasmid |
| Methylobacterium extorquens DM4 | Chromosome, Plasmid p2METDI, Plasmid p1METDI | Chromosome, Plasmid p2METDI, Plasmid p1METDI | Chromosome, Plasmid p2METDI, Plasmid p1METDI |
| Methylobacterium extorquens PA1 | CP000908 | CP000908 | CP000908 |
| Methylobacterium nodulans ORS 2060 | Chromosome, Plasmid pMNOD02, Plasmid pMNOD03, Plasmid pMNOD04, Plasmid pMNOD05, Plasmid pMNOD06, Plasmid pMNOD07, Plasmid pMNOD01 | Chromosome, Plasmid pMNOD02, Plasmid pMNOD03, Plasmid pMNOD04, Plasmid pMNOD05, Plasmid pMNOD06, Plasmid pMNOD07, Plasmid pMNOD01 | Chromosome, Plasmid pMNOD02, Plasmid pMNOD03, Plasmid pMNOD04, Plasmid pMNOD05, Plasmid pMNOD06, Plasmid pMNOD07, Plasmid pMNOD01 |
| Methylobacterium populi BJ001 | Chromosome, Plasmid pMPOP02, Plasmid pMPOP01 | Chromosome, Plasmid pMPOP02, Plasmid pMPOP01 | Chromosome, Plasmid pMPOP02, Plasmid pMPOP01 |
| Methylobacterium radiotolerans JCM 2831 | Chromosome, Plasmid pMRAD02, Plasmid pMRAD01, Plasmid pMRAD03, Plasmid pMRAD06, Plasmid pMRAD07, Plasmid pMRAD04, Plasmid pMRAD05, Plasmid pMRAD08 | Chromosome, Plasmid pMRAD02, Plasmid pMRAD01, Plasmid pMRAD03, Plasmid pMRAD06, Plasmid pMRAD07, Plasmid pMRAD04, Plasmid pMRAD05, Plasmid pMRAD08 | Chromosome, Plasmid pMRAD02, Plasmid pMRAD01, Plasmid pMRAD03, Plasmid pMRAD06, Plasmid pMRAD07, Plasmid pMRAD04, Plasmid pMRAD05, Plasmid pMRAD08 |
| Methylobacterium sp. 4-46 | Chromosome, Plasmid pM44602, Plasmid pM44601 | Chromosome, Plasmid pM44602, Plasmid pM44601 | Chromosome, Plasmid pM44602, Plasmid pM44601 |
| Methylocella silvestris BL2 | CP001280 | CP001280 | CP001280 |
| Methylococcus capsulatus str. Bath | AE017282 | AE017282 | AE017282 |
| Methylotenera mobilis JLW8 | CP001672 | CP001672 | CP001672 |
| Methylotenera sp. 301 | CP002056 | CP002056 | CP002056 |
| Methylovorus sp. MP688 | CP002252 | CP002252 | CP002252 |
| Methylovorus sp. SIP3-4 | Chromosome, Plasmid pMsip01, Plasmid pMsip02 | Chromosome, Plasmid pMsip01, Plasmid pMsip02 | Chromosome, Plasmid pMsip01, Plasmid pMsip02 |
| Micrococcus luteus NCTC 2665 | CP001628 | CP001628 | CP001628 |
| Microcystis aeruginosa NIES-843 | AP009552 | AP009552 | AP009552 |
| Micromonospora aurantiaca ATCC 27029 | CP002162 | CP002162 | CP002162 |
| Micromonospora sp. L5 | CP002399 | CP002399 | CP002399 |
| Mobiluncus curtisii ATCC 43063 | CP001992 | CP001992 | CP001992 |
| Moorella thermoacetica ATCC 39073 | CP000232 | CP000232 | CP000232 |
| Moraxella catarrhalis RH4 | CP002005 | CP002005 | CP002005 |
| Mycobacterium abscessus ATCC 19977 | Chromosome 1, Plasmid unnamed | Chromosome 1, Plasmid unnamed | Chromosome 1, Plasmid unnamed |
| Mycobacterium avium 104 | CP000479 | CP000479 | CP000479 |
| Mycobacterium avium subsp. paratuberculosis K-10 | AE016958 | AE016958 | AE016958 |
| Mycobacterium bovis AF2122/97 | BX248333 | BX248333 | BX248333 |
| Mycobacterium bovis BCG str. Pasteur 1173P2 | AM408590 | AM408590 | AM408590 |
| Mycobacterium bovis BCG str. Tokyo 172 | AP010918 | AP010918 | AP010918 |
| Mycobacterium gilvum PYR-GCK | Chromosome, Plasmid pMFLV02, Plasmid pMFLV03, Plasmid pMFLV01 | Chromosome, Plasmid pMFLV02, Plasmid pMFLV03, Plasmid pMFLV01 | Chromosome, Plasmid pMFLV02, Plasmid pMFLV03, Plasmid pMFLV01 |
| Mycobacterium leprae Br4923 | FM211192 | FM211192 | FM211192 |
| Mycobacterium leprae TN | AL450380 | AL450380 | AL450380 |
| Mycobacterium marinum M | Chromosome, Plasmid pMM23 | Chromosome, Plasmid pMM23 | Chromosome, Plasmid pMM23 |
| Mycobacterium smegmatis str. MC2 155 | CP000480 | CP000480 | CP000480 |
| Mycobacterium sp. JLS | CP000580 | CP000580 | CP000580 |
| Mycobacterium sp. KMS | Chromosome, Plasmid pMKMS02, Plasmid pMKMS01 | Chromosome, Plasmid pMKMS02, Plasmid pMKMS01 | Chromosome, Plasmid pMKMS02, Plasmid pMKMS01 |
| Mycobacterium sp. MCS | Chromosome, Plasmid1 | Chromosome, Plasmid1 | Chromosome, Plasmid1 |
| Mycobacterium sp. Spyr1 | Chromosome, Plasmid pMSPYR101, Plasmid pMSPYR102 | Chromosome, Plasmid pMSPYR101, Plasmid pMSPYR102 | Chromosome, Plasmid pMSPYR101, Plasmid pMSPYR102 |
| Mycobacterium tuberculosis CDC1551 | AE000516 | AE000516 | AE000516 |
| Mycobacterium tuberculosis F11 | CP000717 | CP000717 | CP000717 |
| Mycobacterium tuberculosis H37Ra | CP000611 | CP000611 | CP000611 |
| Mycobacterium tuberculosis H37Rv | AL123456 | AL123456 | AL123456 |
| Mycobacterium tuberculosis KZN 1435 | CP001658 | CP001658 | CP001658 |
| Mycobacterium ulcerans Agy99 | Chromosome, Plasmid pMUM001 | Chromosome, Plasmid pMUM001 | Chromosome, Plasmid pMUM001 |
| Mycobacterium vanbaalenii PYR-1 | CP000511 | CP000511 | CP000511 |
| Mycoplasma agalactiae PG2 | CU179680 | CU179680 | CU179680 |
| Mycoplasma arthritidis 158L3-1 | CP001047 | CP001047 | CP001047 |
| Mycoplasma bovis PG45 | CP002188 | CP002188 | CP002188 |
| Mycoplasma capricolum subsp. capricolum ATCC 27343 | CP000123 | CP000123 | CP000123 |
| Mycoplasma conjunctivae HRC/581 | FM864216 | FM864216 | FM864216 |
| Mycoplasma crocodyli MP145 | CP001991 | CP001991 | CP001991 |
| Mycoplasma fermentans JER | CP001995 | CP001995 | CP001995 |
| Mycoplasma fermentans M64 | CP002458 | CP002458 | CP002458 |
| Mycoplasma fermentans PG18 | AP009608 | AP009608 | AP009608 |
| Mycoplasma gallisepticum str. F | CP001873 | CP001873 | CP001873 |
| Mycoplasma gallisepticum str. R(high) | CP001872 | CP001872 | CP001872 |
| Mycoplasma gallisepticum str. R(low) | AE015450 | AE015450 | AE015450 |
| Mycoplasma genitalium G37 | L43967 | L43967 | L43967 |
| Mycoplasma haemofelis str. Langford 1 | FR773153 | FR773153 | FR773153 |
| Mycoplasma hyopneumoniae 168 | CP002274 | CP002274 | CP002274 |
| Mycoplasma hyopneumoniae 232 | AE017332 | AE017332 | AE017332 |
| Mycoplasma hyopneumoniae 7448 | AE017244 | AE017244 | AE017244 |
| Mycoplasma hyopneumoniae J | AE017243 | AE017243 | AE017243 |
| Mycoplasma hyorhinis HUB-1 | CP002170 | CP002170 | CP002170 |
| Mycoplasma leachii PG50 | CP002108 | CP002108 | CP002108 |
| Mycoplasma mobile 163K | AE017308 | AE017308 | AE017308 |
| Mycoplasma mycoides subsp. capri str. GM12 | CP001621 | CP001621 | CP001621 |
| Mycoplasma mycoides subsp. capri str. GM12 | CP001668 | CP001668 | CP001668 |
| Mycoplasma mycoides subsp. mycoides SC str. Gladysdale | CP002107 | CP002107 | CP002107 |
| Mycoplasma mycoides subsp. mycoides SC str. PG1 | BX293980 | BX293980 | BX293980 |
| Mycoplasma penetrans HF-2 | BA000026 | BA000026 | BA000026 |
| Mycoplasma pneumoniae FH | CP002077 | CP002077 | CP002077 |
| Mycoplasma pneumoniae M129 | U00089 | U00089 | U00089 |
| Mycoplasma pulmonis UAB CTIP | AL445566 | AL445566 | AL445566 |
| Mycoplasma suis str. Illinois | Chromosome, Chromosome | Chromosome, Chromosome | Chromosome, Chromosome |
| Mycoplasma synoviae 53 | AE017245 | AE017245 | AE017245 |
| Myxococcus xanthus DK 1622 | CP000113 | CP000113 | CP000113 |
| Nakamurella multipartita DSM 44233 | CP001737 | CP001737 | CP001737 |
| Nanoarchaeum equitans Kin4-M | AE017199 | AE017199 | AE017199 |
| Natranaerobius thermophilus JW/NM-WN-LF | Chromosome, Plasmid pNTHE02, Plasmid pNTHE01 | Chromosome, Plasmid pNTHE02, Plasmid pNTHE01 | Chromosome, Plasmid pNTHE02, Plasmid pNTHE01 |
| Natrialba magadii ATCC 43099 | Chromosome, Plasmid pNMAG02, Plasmid pNMAG03, Plasmid pNMAG01 | Chromosome, Plasmid pNMAG02, Plasmid pNMAG03, Plasmid pNMAG01 | Chromosome, Plasmid pNMAG02, Plasmid pNMAG03, Plasmid pNMAG01 |
| Natronomonas pharaonis DSM 2160 | Chromosome, Plasmid PL23, Plasmid PL131 | Chromosome, Plasmid PL23, Plasmid PL131 | Chromosome, Plasmid PL23, Plasmid PL131 |
| Nautilia profundicola AmH | CP001279 | CP001279 | CP001279 |
| Neisseria gonorrhoeae FA 1090 | AE004969 | AE004969 | AE004969 |
| Neisseria gonorrhoeae NCCP11945 | Chromosome, Plasmid pNGK | Chromosome, Plasmid pNGK | Chromosome, Plasmid pNGK |
| Neisseria gonorrhoeae TCDC-NG08107 | CP002440 | CP002440 | CP002440 |
| Neisseria lactamica 020-06 | FN995097 | FN995097 | FN995097 |
| Neisseria meningitidis 053442 | CP000381 | CP000381 | CP000381 |
| Neisseria meningitidis 8013 | FM999788 | FM999788 | FM999788 |
| Neisseria meningitidis FAM18 | AM421808 | AM421808 | AM421808 |
| Neisseria meningitidis MC58 | AE002098 | AE002098 | AE002098 |
| Neisseria meningitidis Z2491 | AL157959 | AL157959 | AL157959 |
| Neisseria meningitidis alpha14 | AM889136 | AM889136 | AM889136 |
| Neisseria meningitidis alpha710 | CP001561 | CP001561 | CP001561 |
| Neorickettsia risticii str. Illinois | CP001431 | CP001431 | CP001431 |
| Neorickettsia sennetsu str. Miyayama | CP000237 | CP000237 | CP000237 |
| Nitratifractor salsuginis DSM 16511 | CP002452 | CP002452 | CP002452 |
| Nitratiruptor sp. SB155-2 | AP009178 | AP009178 | AP009178 |
| Nitrobacter hamburgensis X14 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 |
| Nitrobacter winogradskyi Nb-255 | CP000115 | CP000115 | CP000115 |
| Nitrosococcus halophilus Nc4 | Chromosome, Plasmid pNHAL01 | Chromosome, Plasmid pNHAL01 | Chromosome, Plasmid pNHAL01 |
| Nitrosococcus oceani ATCC 19707 | Chromosome, Plasmid A | Chromosome, Plasmid A | Chromosome, Plasmid A |
| Nitrosococcus watsoni C-113 | Chromosome, Plasmid pNWAT01, Plasmid pNWAT02 | Chromosome, Plasmid pNWAT01, Plasmid pNWAT02 | Chromosome, Plasmid pNWAT01, Plasmid pNWAT02 |
| Nitrosomonas europaea ATCC 19718 | AL954747 | AL954747 | AL954747 |
| Nitrosomonas eutropha C91 | Chromosome, Plasmid2, Plasmid1 | Chromosome, Plasmid2, Plasmid1 | Chromosome, Plasmid2, Plasmid1 |
| Nitrosopumilus maritimus SCM1 | CP000866 | CP000866 | CP000866 |
| Nitrosospira multiformis ATCC 25196 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 | Chromosome, Plasmid 1, Plasmid 2, Plasmid 3 |
| Nocardia farcinica IFM 10152 | Chromosome, Plasmid pNF1, Plasmid pNF2 | Chromosome, Plasmid pNF1, Plasmid pNF2 | Chromosome, Plasmid pNF1, Plasmid pNF2 |
| Nocardioides sp. JS614 | Chromosome, Plasmid pNOCA01 | Chromosome, Plasmid pNOCA01 | Chromosome, Plasmid pNOCA01 |
| Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 | Chromosome, Plasmid pNDAS01 | Chromosome, Plasmid pNDAS01 | Chromosome, Plasmid pNDAS01 |
| Nostoc punctiforme PCC 73102 | Chromosome, Plasmid pNPUN02, Plasmid pNPUN03, Plasmid pNPUN04, Plasmid pNPUN05, Plasmid pNPUN01 | Chromosome, Plasmid pNPUN02, Plasmid pNPUN03, Plasmid pNPUN04, Plasmid pNPUN05, Plasmid pNPUN01 | Chromosome, Plasmid pNPUN02, Plasmid pNPUN03, Plasmid pNPUN04, Plasmid pNPUN05, Plasmid pNPUN01 |
| Nostoc sp. PCC 7120 | Chromosome, Plasmid pCC7120alpha, Plasmid pCC7120beta, Plasmid pCC7120gamma, Plasmid pCC7120delta, Plasmid pCC7120epsilon, Plasmid pCC7120zeta | Chromosome, Plasmid pCC7120alpha, Plasmid pCC7120beta, Plasmid pCC7120gamma, Plasmid pCC7120delta, Plasmid pCC7120epsilon, Plasmid pCC7120zeta | Chromosome, Plasmid pCC7120alpha, Plasmid pCC7120beta, Plasmid pCC7120gamma, Plasmid pCC7120delta, Plasmid pCC7120epsilon, Plasmid pCC7120zeta |
| Novosphingobium aromaticivorans DSM 12444 | Chromosome, Plasmid pNL2, Plasmid pNL1 | Chromosome, Plasmid pNL2, Plasmid pNL1 | Chromosome, Plasmid pNL2, Plasmid pNL1 |
| Oceanithermus profundus DSM 14977 | Chromosome, Plasmid pOCEPR01 | Chromosome, Plasmid pOCEPR01 | Chromosome, Plasmid pOCEPR01 |
| Oceanobacillus iheyensis HTE831 | BA000028 | BA000028 | BA000028 |
| Ochrobactrum anthropi ATCC 49188 | Chromosome 1, Chromosome 2, Plasmid pOANT03, Plasmid pOANT04, Plasmid pOANT01, Plasmid pOANT02 | Chromosome 1, Chromosome 2, Plasmid pOANT03, Plasmid pOANT04, Plasmid pOANT01, Plasmid pOANT02 | Chromosome 1, Chromosome 2, Plasmid pOANT03, Plasmid pOANT04, Plasmid pOANT01, Plasmid pOANT02 |
| Odoribacter splanchnicus DSM 20712 | CP002544 | CP002544 | CP002544 |
| Oenococcus oeni PSU-1 | CP000411 | CP000411 | CP000411 |
| Oligotropha carboxidovorans OM5 | CP001196 | CP001196 | CP001196 |
| Olsenella uli DSM 7084 | CP002106 | CP002106 | CP002106 |
| Onion yellows phytoplasma OY-M | AP006628 | AP006628 | AP006628 |
| Opitutus terrae PB90-1 | CP001032 | CP001032 | CP001032 |
| Orientia tsutsugamushi str. Boryong | AM494475 | AM494475 | AM494475 |
| Orientia tsutsugamushi str. Ikeda | AP008981 | AP008981 | AP008981 |
| Paenibacillus polymyxa E681 | CP000154 | CP000154 | CP000154 |
| Paenibacillus polymyxa SC2 | Chromosome, Plasmid pSC2 | Chromosome, Plasmid pSC2 | Chromosome, Plasmid pSC2 |
| Paenibacillus sp. JDR-2 | CP001656 | CP001656 | CP001656 |
| Paenibacillus sp. Y412MC10 | CP001793 | CP001793 | CP001793 |
| Paludibacter propionicigenes WB4 | CP002345 | CP002345 | CP002345 |
| Pantoea ananatis LMG 20103 | CP001875 | CP001875 | CP001875 |
| Pantoea sp. At-9b | Chromosome, Plasmid pPAT9B01, Plasmid pPAT9B02, Plasmid pPAT9B03, Plasmid pPAT9B04, Plasmid pPAT9B05 | Chromosome, Plasmid pPAT9B01, Plasmid pPAT9B02, Plasmid pPAT9B03, Plasmid pPAT9B04, Plasmid pPAT9B05 | Chromosome, Plasmid pPAT9B01, Plasmid pPAT9B02, Plasmid pPAT9B03, Plasmid pPAT9B04, Plasmid pPAT9B05 |
| Pantoea stewartii subsp. stewartii DC283 | GQ249669 | GQ249669 | GQ249669 |
| Pantoea vagans C9-1 | Chromosome, Plasmid pPag3, Plasmid pPag1, Plasmid pPag2 | Chromosome, Plasmid pPag3, Plasmid pPag1, Plasmid pPag2 | Chromosome, Plasmid pPag3, Plasmid pPag1, Plasmid pPag2 |
| Parabacteroides distasonis ATCC 8503 | CP000140 | CP000140 | CP000140 |
| Paracoccus denitrificans PD1222 | Chromosome 1, Plasmid 1, Chromosome 2 | Chromosome 1, Plasmid 1, Chromosome 2 | Chromosome 1, Plasmid 1, Chromosome 2 |
| Parvibaculum lavamentivorans DS-1 | CP000774 | CP000774 | CP000774 |
| Parvularcula bermudensis HTCC2503 | CP002156 | CP002156 | CP002156 |
| Pasteurella multocida subsp. multocida str. Pm70 | AE004439 | AE004439 | AE004439 |
| Pectobacterium atrosepticum SCRI1043 | BX950851 | BX950851 | BX950851 |
| Pectobacterium carotovorum subsp. carotovorum PC1 | CP001657 | CP001657 | CP001657 |
| Pectobacterium wasabiae WPP163 | CP001790 | CP001790 | CP001790 |
| Pediococcus pentosaceus ATCC 25745 | CP000422 | CP000422 | CP000422 |
| Pedobacter heparinus DSM 2366 | CP001681 | CP001681 | CP001681 |
| Pelobacter carbinolicus DSM 2380 | CP000142 | CP000142 | CP000142 |
| Pelobacter propionicus DSM 2379 | Chromosome, Plasmid pPRO1, Plasmid pPRO2 | Chromosome, Plasmid pPRO1, Plasmid pPRO2 | Chromosome, Plasmid pPRO1, Plasmid pPRO2 |
| Pelodictyon phaeoclathratiforme BU-1 | CP001110 | CP001110 | CP001110 |
| Pelotomaculum thermopropionicum SI | AP009389 | AP009389 | AP009389 |
| Persephonella marina EX-H1 | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Petrotoga mobilis SJ95 | CP000879 | CP000879 | CP000879 |
| Phenylobacterium zucineum HLK1 | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Photobacterium profundum SS9 | Chromosome 1, Chromosome 2, Plasmid pPBPR1 | Chromosome 1, Chromosome 2, Plasmid pPBPR1 | Chromosome 1, Chromosome 2, Plasmid pPBPR1 |
| Photorhabdus asymbiotica | Chromosome, Plasmid pPAU1 | Chromosome, Plasmid pPAU1 | Chromosome, Plasmid pPAU1 |
| Photorhabdus luminescens subsp. laumondii TTO1 | BX470251 | BX470251 | BX470251 |
| Picrophilus torridus DSM 9790 | AE017261 | AE017261 | AE017261 |
| Pirellula staleyi DSM 6068 | CP001848 | CP001848 | CP001848 |
| Planctomyces limnophilus DSM 3776 | Chromosome, Plasmid pPLIM01 | Chromosome, Plasmid pPLIM01 | Chromosome, Plasmid pPLIM01 |
| Polaromonas naphthalenivorans CJ2 | Chromosome, Plasmid pPNAP02, Plasmid pPNAP03, Plasmid pPNAP04, Plasmid pPNAP05, Plasmid pPNAP06, Plasmid pPNAP07, Plasmid pPNAP08, Plasmid pPNAP01 | Chromosome, Plasmid pPNAP02, Plasmid pPNAP03, Plasmid pPNAP04, Plasmid pPNAP05, Plasmid pPNAP06, Plasmid pPNAP07, Plasmid pPNAP08, Plasmid pPNAP01 | Chromosome, Plasmid pPNAP02, Plasmid pPNAP03, Plasmid pPNAP04, Plasmid pPNAP05, Plasmid pPNAP06, Plasmid pPNAP07, Plasmid pPNAP08, Plasmid pPNAP01 |
| Polaromonas sp. JS666 | Chromosome, Plasmid 1, Plasmid 2 | Chromosome, Plasmid 1, Plasmid 2 | Chromosome, Plasmid 1, Plasmid 2 |
| Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 | CP000655 | CP000655 | CP000655 |
| Polynucleobacter necessarius subsp. necessarius STIR1 | CP001010 | CP001010 | CP001010 |
| Porphyromonas gingivalis ATCC 33277 | AP009380 | AP009380 | AP009380 |
| Porphyromonas gingivalis W83 | AE015924 | AE015924 | AE015924 |
| Prevotella melaninogenica ATCC 25845 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Prevotella ruminicola 23 | CP002006 | CP002006 | CP002006 |
| Prochlorococcus marinus str. AS9601 | CP000551 | CP000551 | CP000551 |
| Prochlorococcus marinus str. MIT 9211 | CP000878 | CP000878 | CP000878 |
| Prochlorococcus marinus str. MIT 9215 | CP000825 | CP000825 | CP000825 |
| Prochlorococcus marinus str. MIT 9301 | CP000576 | CP000576 | CP000576 |
| Prochlorococcus marinus str. MIT 9303 | CP000554 | CP000554 | CP000554 |
| Prochlorococcus marinus str. MIT 9312 | CP000111 | CP000111 | CP000111 |
| Prochlorococcus marinus str. MIT 9313 | BX548175 | BX548175 | BX548175 |
| Prochlorococcus marinus str. MIT 9515 | CP000552 | CP000552 | CP000552 |
| Prochlorococcus marinus str. NATL1A | CP000553 | CP000553 | CP000553 |
| Prochlorococcus marinus str. NATL2A | CP000095 | CP000095 | CP000095 |
| Prochlorococcus marinus subsp. marinus str. CCMP1375 | AE017126 | AE017126 | AE017126 |
| Prochlorococcus marinus subsp. pastoris str. CCMP1986 | BX548174 | BX548174 | BX548174 |
| Propionibacterium acnes KPA171202 | AE017283 | AE017283 | AE017283 |
| Propionibacterium acnes SK137 | CP001977 | CP001977 | CP001977 |
| Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 | FN806773 | FN806773 | FN806773 |
| Prosthecochloris aestuarii DSM 271 | Chromosome, Plasmid pPAES01 | Chromosome, Plasmid pPAES01 | Chromosome, Plasmid pPAES01 |
| Proteus mirabilis HI4320 | Chromosome, Plasmid pHI4320 | Chromosome, Plasmid pHI4320 | Chromosome, Plasmid pHI4320 |
| Providencia alcalifaciens Ban1 | GQ463139 | GQ463139 | GQ463139 |
| Pseudoalteromonas atlantica T6c | CP000388 | CP000388 | CP000388 |
| Pseudoalteromonas haloplanktis TAC125 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Pseudoalteromonas sp. SM9913 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Pseudomonas aeruginosa LESB58 | FM209186 | FM209186 | FM209186 |
| Pseudomonas aeruginosa PA7 | CP000744 | CP000744 | CP000744 |
| Pseudomonas aeruginosa PAO1 | AE004091 | AE004091 | AE004091 |
| Pseudomonas aeruginosa UCBPP-PA14 | CP000438 | CP000438 | CP000438 |
| Pseudomonas entomophila L48 | CT573326 | CT573326 | CT573326 |
| Pseudomonas fluorescens Pf-5 | CP000076 | CP000076 | CP000076 |
| Pseudomonas fluorescens Pf0-1 | CP000094 | CP000094 | CP000094 |
| Pseudomonas fluorescens SBW25 | AM181176 | AM181176 | AM181176 |
| Pseudomonas mendocina ymp | CP000680 | CP000680 | CP000680 |
| Pseudomonas putida BIRD-1 | CP002290 | CP002290 | CP002290 |
| Pseudomonas putida F1 | CP000712 | CP000712 | CP000712 |
| Pseudomonas putida GB-1 | CP000926 | CP000926 | CP000926 |
| Pseudomonas putida KT2440 | AE015451 | AE015451 | AE015451 |
| Pseudomonas putida W619 | CP000949 | CP000949 | CP000949 |
| Pseudomonas stutzeri A1501 | CP000304 | CP000304 | CP000304 |
| Pseudomonas syringae pv. phaseolicola 1448A | Large plasmid, Chromosome, Small plasmid | Large plasmid, Chromosome, Small plasmid | Large plasmid, Chromosome, Small plasmid |
| Pseudomonas syringae pv. syringae B728a | CP000075 | CP000075 | CP000075 |
| Pseudomonas syringae pv. tomato str. DC3000 | Chromosome, Plasmid pDC3000A, Plasmid pDC3000B | Chromosome, Plasmid pDC3000A, Plasmid pDC3000B | Chromosome, Plasmid pDC3000A, Plasmid pDC3000B |
| Pseudoxanthomonas suwonensis 11-1 | CP002446 | CP002446 | CP002446 |
| Psychrobacter arcticus 273-4 | CP000082 | CP000082 | CP000082 |
| Psychrobacter cryohalolentis K5 | Chromosome, Plasmid 1 | Chromosome, Plasmid 1 | Chromosome, Plasmid 1 |
| Psychrobacter sp. PRwf-1 | Chromosome, Plasmid pRWF102, Plasmid pRWF101 | Chromosome, Plasmid pRWF102, Plasmid pRWF101 | Chromosome, Plasmid pRWF102, Plasmid pRWF101 |
| Psychromonas ingrahamii 37 | CP000510 | CP000510 | CP000510 |
| Pyrobaculum aerophilum str. IM2 | AE009441 | AE009441 | AE009441 |
| Pyrobaculum arsenaticum DSM 13514 | CP000660 | CP000660 | CP000660 |
| Pyrobaculum calidifontis JCM 11548 | CP000561 | CP000561 | CP000561 |
| Pyrobaculum islandicum DSM 4184 | CP000504 | CP000504 | CP000504 |
| Pyrococcus abyssi GE5 | Chromosome, Plasmid pGT5 | Chromosome, Plasmid pGT5 | Chromosome, Plasmid pGT5 |
| Pyrococcus furiosus DSM 3638 | AE009950 | AE009950 | AE009950 |
| Pyrococcus horikoshii OT3 | BA000001 | BA000001 | BA000001 |
| Rahnella sp. Y9602 | Chromosome, Plasmid pRAHAQ01, Plasmid pRAHAQ02 | Chromosome, Plasmid pRAHAQ01, Plasmid pRAHAQ02 | Chromosome, Plasmid pRAHAQ01, Plasmid pRAHAQ02 |
| Ralstonia eutropha H16 | Chromosome 1, Chromosome 2, Megaplasmid pHG1 | Chromosome 1, Chromosome 2, Megaplasmid pHG1 | Chromosome 1, Chromosome 2, Megaplasmid pHG1 |
| Ralstonia eutropha JMP134 | Chromosome 1, Plasmid 1, Chromosome 2, Megaplasmid | Chromosome 1, Plasmid 1, Chromosome 2, Megaplasmid | Chromosome 1, Plasmid 1, Chromosome 2, Megaplasmid |
| Ralstonia pickettii 12D | Chromosome 1, Chromosome 2, Plasmid pRp12D01, Plasmid pRp12D03, Plasmid pRp12D02 | Chromosome 1, Chromosome 2, Plasmid pRp12D01, Plasmid pRp12D03, Plasmid pRp12D02 | Chromosome 1, Chromosome 2, Plasmid pRp12D01, Plasmid pRp12D03, Plasmid pRp12D02 |
| Ralstonia pickettii 12J | Chromosome 1, Chromosome 2, Plasmid pRPIC01 | Chromosome 1, Chromosome 2, Plasmid pRPIC01 | Chromosome 1, Chromosome 2, Plasmid pRPIC01 |
| Ralstonia solanacearum GMI1000 | Chromosome, Plasmid pGMI1000MP | Chromosome, Plasmid pGMI1000MP | Chromosome, Plasmid pGMI1000MP |
| Renibacterium salmoninarum ATCC 33209 | CP000910 | CP000910 | CP000910 |
| Rhizobium etli CFN 42 | Chromosome, Plasmid p42a, Plasmid p42b, Plasmid p42c, Symbiotic plasmid p42d, Plasmid p42e, Plasmid p42f | Chromosome, Plasmid p42a, Plasmid p42b, Plasmid p42c, Symbiotic plasmid p42d, Plasmid p42e, Plasmid p42f | Chromosome, Plasmid p42a, Plasmid p42b, Plasmid p42c, Symbiotic plasmid p42d, Plasmid p42e, Plasmid p42f |
| Rhizobium etli CIAT 652 | Chromosome, Plasmid pB, Plasmid pC, Plasmid pA | Chromosome, Plasmid pB, Plasmid pC, Plasmid pA | Chromosome, Plasmid pB, Plasmid pC, Plasmid pA |
| Rhizobium leguminosarum bv. trifolii WSM1325 | Chromosome, Plasmid pR132501, Plasmid pR132504, Plasmid pR132503, Plasmid pR132502, Plasmid pR132505 | Chromosome, Plasmid pR132501, Plasmid pR132504, Plasmid pR132503, Plasmid pR132502, Plasmid pR132505 | Chromosome, Plasmid pR132501, Plasmid pR132504, Plasmid pR132503, Plasmid pR132502, Plasmid pR132505 |
| Rhizobium leguminosarum bv. trifolii WSM2304 | Chromosome, Plasmid pRLG202, Plasmid pRLG204, Plasmid pRLG203, Plasmid pRLG201 | Chromosome, Plasmid pRLG202, Plasmid pRLG204, Plasmid pRLG203, Plasmid pRLG201 | Chromosome, Plasmid pRLG202, Plasmid pRLG204, Plasmid pRLG203, Plasmid pRLG201 |
| Rhizobium leguminosarum bv. viciae 3841 | Chromosome, Plasmid pRL7, Plasmid pRL8, Plasmid pRL9, Plasmid pRL10, Plasmid pRL11, Plasmid pRL12 | Chromosome, Plasmid pRL7, Plasmid pRL8, Plasmid pRL9, Plasmid pRL10, Plasmid pRL11, Plasmid pRL12 | Chromosome, Plasmid pRL7, Plasmid pRL8, Plasmid pRL9, Plasmid pRL10, Plasmid pRL11, Plasmid pRL12 |
| Rhodobacter capsulatus SB 1003 | Chromosome, Plasmid pRCB133 | Chromosome, Plasmid pRCB133 | Chromosome, Plasmid pRCB133 |
| Rhodobacter sphaeroides 2.4.1 | Chromosome 1, Chromosome 2, Plasmid A, Plasmid B, Plasmid C, Plasmid D, Plasmid E | Chromosome 1, Chromosome 2, Plasmid A, Plasmid B, Plasmid C, Plasmid D, Plasmid E | Chromosome 1, Chromosome 2, Plasmid A, Plasmid B, Plasmid C, Plasmid D, Plasmid E |
| Rhodobacter sphaeroides ATCC 17025 | Chromosome, Plasmid pRSPA02, Plasmid pRSPA03, Plasmid pRSPA04, Plasmid pRSPA05, Plasmid pRSPA01 | Chromosome, Plasmid pRSPA02, Plasmid pRSPA03, Plasmid pRSPA04, Plasmid pRSPA05, Plasmid pRSPA01 | Chromosome, Plasmid pRSPA02, Plasmid pRSPA03, Plasmid pRSPA04, Plasmid pRSPA05, Plasmid pRSPA01 |
| Rhodobacter sphaeroides ATCC 17029 | Chromosome 1, Chromosome 2, Plasmid pRSPH01 | Chromosome 1, Chromosome 2, Plasmid pRSPH01 | Chromosome 1, Chromosome 2, Plasmid pRSPH01 |
| Rhodobacter sphaeroides KD131 | Chromosome 1, Chromosome 2, Plasmid pRSKD131A, Plasmid pRSKD131B | Chromosome 1, Chromosome 2, Plasmid pRSKD131A, Plasmid pRSKD131B | Chromosome 1, Chromosome 2, Plasmid pRSKD131A, Plasmid pRSKD131B |
| Rhodococcus equi 103S | FN563149 | FN563149 | FN563149 |
| Rhodococcus erythropolis PR4 | Chromosome, Plasmid pREC1, Plasmid pREC2, Plasmid pREL1 | Chromosome, Plasmid pREC1, Plasmid pREC2, Plasmid pREL1 | Chromosome, Plasmid pREC1, Plasmid pREC2, Plasmid pREL1 |
| Rhodococcus jostii RHA1 | Chromosome, Plasmid pRHL1, Plasmid pRHL2, Plasmid pRHL3 | Chromosome, Plasmid pRHL1, Plasmid pRHL2, Plasmid pRHL3 | Chromosome, Plasmid pRHL1, Plasmid pRHL2, Plasmid pRHL3 |
| Rhodococcus opacus B4 | Chromosome, Plasmid pROB02, Plasmid pKNR, Plasmid pKNR02, Plasmid pKNR01, Plasmid pROB01 | Chromosome, Plasmid pROB02, Plasmid pKNR, Plasmid pKNR02, Plasmid pKNR01, Plasmid pROB01 | Chromosome, Plasmid pROB02, Plasmid pKNR, Plasmid pKNR02, Plasmid pKNR01, Plasmid pROB01 |
| Rhodoferax ferrireducens T118 | Chromosome, Plasmid1 | Chromosome, Plasmid1 | Chromosome, Plasmid1 |
| Rhodomicrobium vannielii ATCC 17100 | CP002292 | CP002292 | CP002292 |
| Rhodopirellula baltica SH 1 | BX119912 | BX119912 | BX119912 |
| Rhodopseudomonas palustris BisA53 | CP000463 | CP000463 | CP000463 |
| Rhodopseudomonas palustris BisB18 | CP000301 | CP000301 | CP000301 |
| Rhodopseudomonas palustris BisB5 | CP000283 | CP000283 | CP000283 |
| Rhodopseudomonas palustris CGA009 | Chromosome, Plasmid pRPA | Chromosome, Plasmid pRPA | Chromosome, Plasmid pRPA |
| Rhodopseudomonas palustris DX-1 | CP002418 | CP002418 | CP002418 |
| Rhodopseudomonas palustris HaA2 | CP000250 | CP000250 | CP000250 |
| Rhodopseudomonas palustris TIE-1 | CP001096 | CP001096 | CP001096 |
| Rhodospirillum centenum SW | CP000613 | CP000613 | CP000613 |
| Rhodospirillum rubrum ATCC 11170 | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Rhodothermus marinus DSM 4252 | Chromosome, Plasmid pRMAR01 | Chromosome, Plasmid pRMAR01 | Chromosome, Plasmid pRMAR01 |
| Rickettsia africae ESF-5 | Chromosome, Plasmid pRAF | Chromosome, Plasmid pRAF | Chromosome, Plasmid pRAF |
| Rickettsia akari str. Hartford | CP000847 | CP000847 | CP000847 |
| Rickettsia bellii OSU 85-389 | CP000849 | CP000849 | CP000849 |
| Rickettsia bellii RML369-C | CP000849 | CP000849 | CP000849 |
| Rickettsia canadensis str. McKiel | CP000849 | CP000849 | CP000849 |
| Rickettsia conorii str. Malish 7 | AE006914 | AE006914 | AE006914 |
| Rickettsia felis URRWXCal2 | Chromosome, Plasmid pRF, Plasmid pRFdelta | Chromosome, Plasmid pRF, Plasmid pRFdelta | Chromosome, Plasmid pRF, Plasmid pRFdelta |
| Rickettsia massiliae MTU5 | Chromosome, Plasmid pRMA | Chromosome, Plasmid pRMA | Chromosome, Plasmid pRMA |
| Rickettsia peacockii str. Rustic | Chromosome, Plasmid pRPR | Chromosome, Plasmid pRPR | Chromosome, Plasmid pRPR |
| Rickettsia prowazekii Rp22 | CP001584 | CP001584 | CP001584 |
| Rickettsia prowazekii str. Madrid E | AJ235269 | AJ235269 | AJ235269 |
| Rickettsia rickettsii str. 'Sheila Smith' | CP000848 | CP000848 | CP000848 |
| Rickettsia rickettsii str. Iowa | CP000766 | CP000766 | CP000766 |
| Rickettsia typhi str. Wilmington | AE017197 | AE017197 | AE017197 |
| Riemerella anatipestifer DSM 15868 | CP002346 | CP002346 | CP002346 |
| Robiginitalea biformata HTCC2501 | CP001712 | CP001712 | CP001712 |
| Roseburia intestinalis | FP929049 | FP929049 | FP929049 |
| Roseburia intestinalis XB6B4 | FP929050 | FP929050 | FP929050 |
| Roseiflexus castenholzii DSM 13941 | CP000804 | CP000804 | CP000804 |
| Roseiflexus sp. RS-1 | CP000686 | CP000686 | CP000686 |
| Roseobacter denitrificans OCh 114 | Chromosome, Plasmid pTB1, Plasmid pTB2, Plasmid pTB3, Plasmid pTB4 | Chromosome, Plasmid pTB1, Plasmid pTB2, Plasmid pTB3, Plasmid pTB4 | Chromosome, Plasmid pTB1, Plasmid pTB2, Plasmid pTB3, Plasmid pTB4 |
| Rothia dentocariosa ATCC 17931 | CP002280 | CP002280 | CP002280 |
| Rothia mucilaginosa | AP011540 | AP011540 | AP011540 |
| Rubrobacter xylanophilus DSM 9941 | CP000386 | CP000386 | CP000386 |
| Ruegeria pomeroyi DSS-3 | Chromosome, Megaplasmid | Chromosome, Megaplasmid | Chromosome, Megaplasmid |
| Ruegeria sp. TM1040 | Chromosome, Mega plasmid, Plasmid unnamed | Chromosome, Mega plasmid, Plasmid unnamed | Chromosome, Mega plasmid, Plasmid unnamed |
| Ruminococcus albus 7 | Chromosome, Plasmid pRUMAL01, Plasmid pRUMAL02, Plasmid pRUMAL03, Plasmid pRUMAL04 | Chromosome, Plasmid pRUMAL01, Plasmid pRUMAL02, Plasmid pRUMAL03, Plasmid pRUMAL04 | Chromosome, Plasmid pRUMAL01, Plasmid pRUMAL02, Plasmid pRUMAL03, Plasmid pRUMAL04 |
| Ruminococcus bromii | FP929051 | FP929051 | FP929051 |
| Ruminococcus obeum | FP929054 | FP929054 | FP929054 |
| Ruminococcus sp. | FP929053 | FP929053 | FP929053 |
| Ruminococcus sp. 18P13 | FP929052 | FP929052 | FP929052 |
| Ruminococcus torques | FP929055 | FP929055 | FP929055 |
| Saccharomonospora viridis DSM 43017 | CP001683 | CP001683 | CP001683 |
| Saccharophagus degradans 2-40 | CP000282 | CP000282 | CP000282 |
| Saccharopolyspora erythraea NRRL 2338 | AM420293 | AM420293 | AM420293 |
| Salinibacter ruber DSM 13855 | Chromosome, Plasmid pSR35 | Chromosome, Plasmid pSR35 | Chromosome, Plasmid pSR35 |
| Salinispora arenicola CNS-205 | CP000850 | CP000850 | CP000850 |
| Salinispora tropica CNB-440 | CP000667 | CP000667 | CP000667 |
| Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980 | CP000880 | CP000880 | CP000880 |
| Salmonella enterica subsp. enterica serovar Agona str. SL483 | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 | Plasmid pSCV50, Chromosome, Plasmid pSC138 | Plasmid pSCV50, Chromosome, Plasmid pSC138 | Plasmid pSCV50, Chromosome, Plasmid pSC138 |
| Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 | Chromosome, Plasmid pCT02021853_74 | Chromosome, Plasmid pCT02021853_74 | Chromosome, Plasmid pCT02021853_74 |
| Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 | AM933172 | AM933172 | AM933172 |
| Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 | AM933173 | AM933173 | AM933173 |
| Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 | Chromosome, Plasmid pSL476_3, Plasmid pSL476_91 | Chromosome, Plasmid pSL476_3, Plasmid pSL476_91 | Chromosome, Plasmid pSL476_3, Plasmid pSL476_91 |
| Salmonella enterica subsp. enterica serovar Newport str. SL254 | Chromosome, Plasmid pSL254_3, Plasmid pSN254 | Chromosome, Plasmid pSL254_3, Plasmid pSN254 | Chromosome, Plasmid pSL254_3, Plasmid pSN254 |
| Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 | FM200053 | FM200053 | FM200053 |
| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 | CP000026 | CP000026 | CP000026 |
| Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 | CP000886 | CP000886 | CP000886 |
| Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 | Chromosome, Plasmid pSPCV | Chromosome, Plasmid pSPCV | Chromosome, Plasmid pSPCV |
| Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 | Chromosome, Plasmid pCVM19633_4, Plasmid pCVM19633_110 | Chromosome, Plasmid pCVM19633_4, Plasmid pCVM19633_110 | Chromosome, Plasmid pCVM19633_4, Plasmid pCVM19633_110 |
| Salmonella enterica subsp. enterica serovar Typhi str. CT18 | Chromosome, Plasmid pHCM1, Plasmid pHCM2 | Chromosome, Plasmid pHCM1, Plasmid pHCM2 | Chromosome, Plasmid pHCM1, Plasmid pHCM2 |
| Salmonella enterica subsp. enterica serovar Typhi str. Ty2 | AE014613 | AE014613 | AE014613 |
| Salmonella enterica subsp. enterica serovar Typhimurium | FN424405 | FN424405 | FN424405 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74 | Chromosome, Plasmid TY474p1, Plasmid TY474p2, Plasmid TY474p3 | Chromosome, Plasmid TY474p1, Plasmid TY474p2, Plasmid TY474p3 | Chromosome, Plasmid TY474p1, Plasmid TY474p2, Plasmid TY474p3 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Chromosome, Plasmid pSLT | Chromosome, Plasmid pSLT | Chromosome, Plasmid pSLT |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | FQ312003 | FQ312003 | FQ312003 |
| Sanguibacter keddieii DSM 10542 | CP001819 | CP001819 | CP001819 |
| Sebaldella termitidis ATCC 33386 | Chromosome, Plasmid pSTERM02, Plasmid pSTERM01 | Chromosome, Plasmid pSTERM02, Plasmid pSTERM01 | Chromosome, Plasmid pSTERM02, Plasmid pSTERM01 |
| Segniliparus rotundus DSM 44985 | CP001958 | CP001958 | CP001958 |
| Serratia proteamaculans 568 | Chromosome, Plasmid pSPRO01 | Chromosome, Plasmid pSPRO01 | Chromosome, Plasmid pSPRO01 |
| Shewanella amazonensis SB2B | CP000507 | CP000507 | CP000507 |
| Shewanella baltica OS155 | Chromosome, Plasmid pSbal02, Plasmid pSbal03, Plasmid pSbal04, Plasmid pSbal01 | Chromosome, Plasmid pSbal02, Plasmid pSbal03, Plasmid pSbal04, Plasmid pSbal01 | Chromosome, Plasmid pSbal02, Plasmid pSbal03, Plasmid pSbal04, Plasmid pSbal01 |
| Shewanella baltica OS185 | Chromosome, Plasmid pS18501 | Chromosome, Plasmid pS18501 | Chromosome, Plasmid pS18501 |
| Shewanella baltica OS195 | Chromosome, Plasmid pS19502, Plasmid pS19503, Plasmid pS19501 | Chromosome, Plasmid pS19502, Plasmid pS19503, Plasmid pS19501 | Chromosome, Plasmid pS19502, Plasmid pS19503, Plasmid pS19501 |
| Shewanella baltica OS223 | Chromosome, Plasmid pS22302, Plasmid pS22303, Plasmid pS22301 | Chromosome, Plasmid pS22302, Plasmid pS22303, Plasmid pS22301 | Chromosome, Plasmid pS22302, Plasmid pS22303, Plasmid pS22301 |
| Shewanella baltica OS678 | Chromosome, Plasmid pSBAL67801 | Chromosome, Plasmid pSBAL67801 | Chromosome, Plasmid pSBAL67801 |
| Shewanella denitrificans OS217 | CP000302 | CP000302 | CP000302 |
| Shewanella frigidimarina NCIMB 400 | CP000447 | CP000447 | CP000447 |
| Shewanella halifaxensis HAW-EB4 | CP000931 | CP000931 | CP000931 |
| Shewanella loihica PV-4 | CP000606 | CP000606 | CP000606 |
| Shewanella oneidensis MR-1 | Chromosome, Megaplasmid | Chromosome, Megaplasmid | Chromosome, Megaplasmid |
| Shewanella pealeana ATCC 700345 | CP000851 | CP000851 | CP000851 |
| Shewanella piezotolerans WP3 | CP000472 | CP000472 | CP000472 |
| Shewanella putrefaciens 200 | CP002457 | CP002457 | CP002457 |
| Shewanella putrefaciens CN-32 | CP000681 | CP000681 | CP000681 |
| Shewanella sediminis HAW-EB3 | CP000821 | CP000821 | CP000821 |
| Shewanella sp. ANA-3 | Chromosome 1, Plasmid 1 | Chromosome 1, Plasmid 1 | Chromosome 1, Plasmid 1 |
| Shewanella sp. MR-4 | CP000446 | CP000446 | CP000446 |
| Shewanella sp. MR-7 | Chromosome, Plasmid1 | Chromosome, Plasmid1 | Chromosome, Plasmid1 |
| Shewanella sp. W3-18-1 | CP000503 | CP000503 | CP000503 |
| Shewanella violacea DSS12 | AP011177 | AP011177 | AP011177 |
| Shewanella woodyi ATCC 51908 | CP000961 | CP000961 | CP000961 |
| Shigella boydii CDC 3083-94 | Chromosome, Plasmid pBS512_33, Plasmid pBS512_5, Plasmid pBS512_211, Plasmid pBS512_7, Plasmid pBS512_2 | Chromosome, Plasmid pBS512_33, Plasmid pBS512_5, Plasmid pBS512_211, Plasmid pBS512_7, Plasmid pBS512_2 | Chromosome, Plasmid pBS512_33, Plasmid pBS512_5, Plasmid pBS512_211, Plasmid pBS512_7, Plasmid pBS512_2 |
| Shigella boydii Sb227 | Chromosome, Plasmid pSB4_227 | Chromosome, Plasmid pSB4_227 | Chromosome, Plasmid pSB4_227 |
| Shigella dysenteriae Sd197 | Chromosome, Plasmid pSD197_spA, Plasmid pSD1_197 | Chromosome, Plasmid pSD197_spA, Plasmid pSD1_197 | Chromosome, Plasmid pSD197_spA, Plasmid pSD1_197 |
| Shigella flexneri 2002017 | Chromosome, Plasmid pSFxv_2, Plasmid pSFxv_3, Plasmid pSFxv_4, Plasmid pSFxv_5, Plasmid pSFxv_1 | Chromosome, Plasmid pSFxv_2, Plasmid pSFxv_3, Plasmid pSFxv_4, Plasmid pSFxv_5, Plasmid pSFxv_1 | Chromosome, Plasmid pSFxv_2, Plasmid pSFxv_3, Plasmid pSFxv_4, Plasmid pSFxv_5, Plasmid pSFxv_1 |
| Shigella flexneri 2a str. 2457T | AE014073 | AE014073 | AE014073 |
| Shigella flexneri 2a str. 301 | Chromosome, Plasmid pCP301 | Chromosome, Plasmid pCP301 | Chromosome, Plasmid pCP301 |
| Shigella flexneri 5 str. 8401 | CP000266 | CP000266 | CP000266 |
| Shigella sonnei Ss046 | Chromosome, Plasmid pSS_046, Plasmid pSS046_spA, Plasmid pSS046_spB, Plasmid pSS046_spC | Chromosome, Plasmid pSS_046, Plasmid pSS046_spA, Plasmid pSS046_spB, Plasmid pSS046_spC | Chromosome, Plasmid pSS_046, Plasmid pSS046_spA, Plasmid pSS046_spB, Plasmid pSS046_spC |
| Sideroxydans lithotrophicus ES-1 | CP001965 | CP001965 | CP001965 |
| Sinorhizobium fredii NGR234 | Chromosome, Plasmid pNGR234a, Plasmid pNGR234b | Chromosome, Plasmid pNGR234a, Plasmid pNGR234b | Chromosome, Plasmid pNGR234a, Plasmid pNGR234b |
| Sinorhizobium medicae WSM419 | Chromosome, Plasmid pSMED02, Plasmid pSMED03, Plasmid pSMED01 | Chromosome, Plasmid pSMED02, Plasmid pSMED03, Plasmid pSMED01 | Chromosome, Plasmid pSMED02, Plasmid pSMED03, Plasmid pSMED01 |
| Sinorhizobium meliloti 1021 | Chromosome, Plasmid pSymA, Plasmid pSymB | Chromosome, Plasmid pSymA, Plasmid pSymB | Chromosome, Plasmid pSymA, Plasmid pSymB |
| Slackia heliotrinireducens DSM 20476 | CP001684 | CP001684 | CP001684 |
| Sodalis glossinidius str. 'morsitans' | Chromosome, Plasmid pSG1, Plasmid pSG2, Plasmid pSG3 | Chromosome, Plasmid pSG1, Plasmid pSG2, Plasmid pSG3 | Chromosome, Plasmid pSG1, Plasmid pSG2, Plasmid pSG3 |
| Sorangium cellulosum 'So ce 56' | AM746676 | AM746676 | AM746676 |
| Sphaerobacter thermophilus DSM 20745 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Sphingobium japonicum UT26S | Chromosome 1, Plasmid pCHQ1, Plasmid pUT1, Chromosome 2, Plasmid pUT2 | Chromosome 1, Plasmid pCHQ1, Plasmid pUT1, Chromosome 2, Plasmid pUT2 | Chromosome 1, Plasmid pCHQ1, Plasmid pUT1, Chromosome 2, Plasmid pUT2 |
| Sphingomonas wittichii RW1 | Chromosome, Plasmid pSWIT02, Plasmid pSWIT01 | Chromosome, Plasmid pSWIT02, Plasmid pSWIT01 | Chromosome, Plasmid pSWIT02, Plasmid pSWIT01 |
| Sphingopyxis alaskensis RB2256 | Chromosome, F plasmid | Chromosome, F plasmid | Chromosome, F plasmid |
| Spirochaeta smaragdinae DSM 11293 | CP002116 | CP002116 | CP002116 |
| Spirochaeta sp. Buddy | CP002541 | CP002541 | CP002541 |
| Spirochaeta thermophila DSM 6192 | CP001698 | CP001698 | CP001698 |
| Spirosoma linguale DSM 74 | Chromosome, Plasmid pSLIN02, Plasmid pSLIN03, Plasmid pSLIN04, Plasmid pSLIN05, Plasmid pSLIN06, Plasmid pSLIN07, Plasmid pSLIN08, Plasmid pSLIN01 | Chromosome, Plasmid pSLIN02, Plasmid pSLIN03, Plasmid pSLIN04, Plasmid pSLIN05, Plasmid pSLIN06, Plasmid pSLIN07, Plasmid pSLIN08, Plasmid pSLIN01 | Chromosome, Plasmid pSLIN02, Plasmid pSLIN03, Plasmid pSLIN04, Plasmid pSLIN05, Plasmid pSLIN06, Plasmid pSLIN07, Plasmid pSLIN08, Plasmid pSLIN01 |
| Stackebrandtia nassauensis DSM 44728 | CP001778 | CP001778 | CP001778 |
| Staphylococcus aureus 04-02981 | CP001844 | CP001844 | CP001844 |
| Staphylococcus aureus ED98 | Chromosome, Plasmid pT181, Plasmid pAVX, Plasmid pAVY | Chromosome, Plasmid pT181, Plasmid pAVX, Plasmid pAVY | Chromosome, Plasmid pT181, Plasmid pAVX, Plasmid pAVY |
| Staphylococcus aureus RF122 | AJ938182 | AJ938182 | AJ938182 |
| Staphylococcus aureus subsp. aureus COL | Chromosome, Plasmid pT181 | Chromosome, Plasmid pT181 | Chromosome, Plasmid pT181 |
| Staphylococcus aureus subsp. aureus ED133 | CP001996 | CP001996 | CP001996 |
| Staphylococcus aureus subsp. aureus JH1 | Chromosome, Plasmid pSJH101 | Chromosome, Plasmid pSJH101 | Chromosome, Plasmid pSJH101 |
| Staphylococcus aureus subsp. aureus JH9 | Chromosome, Plasmid pSJH901 | Chromosome, Plasmid pSJH901 | Chromosome, Plasmid pSJH901 |
| Staphylococcus aureus subsp. aureus JKD6159 | Chromosome, Plasmid pSaa6159 | Chromosome, Plasmid pSaa6159 | Chromosome, Plasmid pSaa6159 |
| Staphylococcus aureus subsp. aureus MRSA252 | BX571856 | BX571856 | BX571856 |
| Staphylococcus aureus subsp. aureus MSSA476 | Chromosome, Plasmid pSAS | Chromosome, Plasmid pSAS | Chromosome, Plasmid pSAS |
| Staphylococcus aureus subsp. aureus MW2 | BA000033 | BA000033 | BA000033 |
| Staphylococcus aureus subsp. aureus Mu3 | AP009324 | AP009324 | AP009324 |
| Staphylococcus aureus subsp. aureus Mu50 | Chromosome, Plasmid VRSAp | Chromosome, Plasmid VRSAp | Chromosome, Plasmid VRSAp |
| Staphylococcus aureus subsp. aureus N315 | Chromosome, Plasmid pN315 | Chromosome, Plasmid pN315 | Chromosome, Plasmid pN315 |
| Staphylococcus aureus subsp. aureus NCTC 8325 | CP000253 | CP000253 | CP000253 |
| Staphylococcus aureus subsp. aureus ST398 | Chromosome, Plasmid pS0385-2, Plasmid pS0385-3, Plasmid pS0385-1 | Chromosome, Plasmid pS0385-2, Plasmid pS0385-3, Plasmid pS0385-1 | Chromosome, Plasmid pS0385-2, Plasmid pS0385-3, Plasmid pS0385-1 |
| Staphylococcus aureus subsp. aureus TCH60 | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Staphylococcus aureus subsp. aureus TW20 | Chromosome, Plasmid pTW20_2, Plasmid pTW20_1 | Chromosome, Plasmid pTW20_2, Plasmid pTW20_1 | Chromosome, Plasmid pTW20_2, Plasmid pTW20_1 |
| Staphylococcus aureus subsp. aureus USA300_FPR3757 | Chromosome, Plasmid pUSA01, Plasmid pUSA02, Plasmid pUSA03 | Chromosome, Plasmid pUSA01, Plasmid pUSA02, Plasmid pUSA03 | Chromosome, Plasmid pUSA01, Plasmid pUSA02, Plasmid pUSA03 |
| Staphylococcus aureus subsp. aureus USA300_TCH1516 | Chromosome, Plasmid pUSA01-HOU, Plasmid pUSA300HOUMR | Chromosome, Plasmid pUSA01-HOU, Plasmid pUSA300HOUMR | Chromosome, Plasmid pUSA01-HOU, Plasmid pUSA300HOUMR |
| Staphylococcus aureus subsp. aureus str. JKD6008 | CP002120 | CP002120 | CP002120 |
| Staphylococcus aureus subsp. aureus str. Newman | AP009351 | AP009351 | AP009351 |
| Staphylococcus carnosus subsp. carnosus TM300 | AM295250 | AM295250 | AM295250 |
| Staphylococcus epidermidis ATCC 12228 | Chromosome, Plasmid pSE-12228-01, Plasmid pSE-12228-02, Plasmid pSE-12228-03, Plasmid pSE-12228-04, Plasmid pSE-12228-05, Plasmid pSE-12228-06 | Chromosome, Plasmid pSE-12228-01, Plasmid pSE-12228-02, Plasmid pSE-12228-03, Plasmid pSE-12228-04, Plasmid pSE-12228-05, Plasmid pSE-12228-06 | Chromosome, Plasmid pSE-12228-01, Plasmid pSE-12228-02, Plasmid pSE-12228-03, Plasmid pSE-12228-04, Plasmid pSE-12228-05, Plasmid pSE-12228-06 |
| Staphylococcus epidermidis RP62A | Chromosome, Plasmid pSERP | Chromosome, Plasmid pSERP | Chromosome, Plasmid pSERP |
| Staphylococcus haemolyticus JCSC1435 | Chromosome, Plasmid pSHaeB, Plasmid pSHaeC, Plasmid pSHaeA | Chromosome, Plasmid pSHaeB, Plasmid pSHaeC, Plasmid pSHaeA | Chromosome, Plasmid pSHaeB, Plasmid pSHaeC, Plasmid pSHaeA |
| Staphylococcus lugdunensis HKU09-01 | CP001837 | CP001837 | CP001837 |
| Staphylococcus pseudintermedius ED99 | CP002478 | CP002478 | CP002478 |
| Staphylococcus pseudintermedius HKU10-03 | CP002439 | CP002439 | CP002439 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | Chromosome, Plasmid pSSP2, Plasmid pSSP1 | Chromosome, Plasmid pSSP2, Plasmid pSSP1 | Chromosome, Plasmid pSSP2, Plasmid pSSP1 |
| Staphylothermus hellenicus DSM 12710 | CP002051 | CP002051 | CP002051 |
| Staphylothermus marinus F1 | CP000575 | CP000575 | CP000575 |
| Starkeya novella DSM 506 | CP002026 | CP002026 | CP002026 |
| Stenotrophomonas maltophilia K279a | AM743169 | AM743169 | AM743169 |
| Stenotrophomonas maltophilia R551-3 | CP001111 | CP001111 | CP001111 |
| Stigmatella aurantiaca DW4/3-1 | CP002271 | CP002271 | CP002271 |
| Streptobacillus moniliformis DSM 12112 | Chromosome, Plasmid pSMON01 | Chromosome, Plasmid pSMON01 | Chromosome, Plasmid pSMON01 |
| Streptococcus agalactiae 2603V/R | AE009948 | AE009948 | AE009948 |
| Streptococcus agalactiae A909 | CP000114 | CP000114 | CP000114 |
| Streptococcus agalactiae NEM316 | AL732656 | AL732656 | AL732656 |
| Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 | CP002215 | CP002215 | CP002215 |
| Streptococcus dysgalactiae subsp. equisimilis GGS_124 | AP010935 | AP010935 | AP010935 |
| Streptococcus equi subsp. equi 4047 | FM204883 | FM204883 | FM204883 |
| Streptococcus equi subsp. zooepidemicus | FM204884 | FM204884 | FM204884 |
| Streptococcus equi subsp. zooepidemicus MGCS10565 | CP001129 | CP001129 | CP001129 |
| Streptococcus gallolyticus UCN34 | FN597254 | FN597254 | FN597254 |
| Streptococcus gordonii str. Challis substr. CH1 | CP000725 | CP000725 | CP000725 |
| Streptococcus mitis B6 | FN568063 | FN568063 | FN568063 |
| Streptococcus mutans NN2025 | AP010655 | AP010655 | AP010655 |
| Streptococcus mutans UA159 | AE014133 | AE014133 | AE014133 |
| Streptococcus pneumoniae 670-6B | CP002176 | CP002176 | CP002176 |
| Streptococcus pneumoniae 70585 | CP000918 | CP000918 | CP000918 |
| Streptococcus pneumoniae AP200 | CP002121 | CP002121 | CP002121 |
| Streptococcus pneumoniae ATCC 700669 | FM211187 | FM211187 | FM211187 |
| Streptococcus pneumoniae CGSP14 | CP001033 | CP001033 | CP001033 |
| Streptococcus pneumoniae D39 | CP000410 | CP000410 | CP000410 |
| Streptococcus pneumoniae G54 | CP001015 | CP001015 | CP001015 |
| Streptococcus pneumoniae Hungary19A-6 | CP000936 | CP000936 | CP000936 |
| Streptococcus pneumoniae INV104 | FQ312030 | FQ312030 | FQ312030 |
| Streptococcus pneumoniae INV200 | FQ312029 | FQ312029 | FQ312029 |
| Streptococcus pneumoniae JJA | CP000919 | CP000919 | CP000919 |
| Streptococcus pneumoniae OXC141 | FQ312027 | FQ312027 | FQ312027 |
| Streptococcus pneumoniae P1031 | CP000920 | CP000920 | CP000920 |
| Streptococcus pneumoniae R6 | AE007317 | AE007317 | AE007317 |
| Streptococcus pneumoniae SPN032672 | FQ312039 | FQ312039 | FQ312039 |
| Streptococcus pneumoniae SPN033038 | FQ312042 | FQ312042 | FQ312042 |
| Streptococcus pneumoniae SPN034156 | FQ312045 | FQ312045 | FQ312045 |
| Streptococcus pneumoniae SPN034183 | FQ312043 | FQ312043 | FQ312043 |
| Streptococcus pneumoniae SPN994038 | FQ312041 | FQ312041 | FQ312041 |
| Streptococcus pneumoniae SPN994039 | FQ312044 | FQ312044 | FQ312044 |
| Streptococcus pneumoniae TCH8431/19A | CP001993 | CP001993 | CP001993 |
| Streptococcus pneumoniae TIGR4 | AE005672 | AE005672 | AE005672 |
| Streptococcus pneumoniae Taiwan19F-14 | CP000921 | CP000921 | CP000921 |
| Streptococcus pyogenes M1 GAS | AE004092 | AE004092 | AE004092 |
| Streptococcus pyogenes MGAS10270 | CP000260 | CP000260 | CP000260 |
| Streptococcus pyogenes MGAS10394 | CP000003 | CP000003 | CP000003 |
| Streptococcus pyogenes MGAS10750 | CP000262 | CP000262 | CP000262 |
| Streptococcus pyogenes MGAS2096 | CP000261 | CP000261 | CP000261 |
| Streptococcus pyogenes MGAS315 | AE014074 | AE014074 | AE014074 |
| Streptococcus pyogenes MGAS5005 | CP000017 | CP000017 | CP000017 |
| Streptococcus pyogenes MGAS6180 | CP000056 | CP000056 | CP000056 |
| Streptococcus pyogenes MGAS8232 | AE009949 | AE009949 | AE009949 |
| Streptococcus pyogenes MGAS9429 | CP000259 | CP000259 | CP000259 |
| Streptococcus pyogenes NZ131 | CP000829 | CP000829 | CP000829 |
| Streptococcus pyogenes SSI-1 | BA000034 | BA000034 | BA000034 |
| Streptococcus pyogenes str. Manfredo | AM295007 | AM295007 | AM295007 |
| Streptococcus sanguinis SK36 | CP000387 | CP000387 | CP000387 |
| Streptococcus suis 05ZYH33 | CP000407 | CP000407 | CP000407 |
| Streptococcus suis 98HAH33 | CP000408 | CP000408 | CP000408 |
| Streptococcus suis BM407 | Chromosome, Plasmid pBM407 | Chromosome, Plasmid pBM407 | Chromosome, Plasmid pBM407 |
| Streptococcus suis GZ1 | CP000837 | CP000837 | CP000837 |
| Streptococcus suis JS14 | CP002465 | CP002465 | CP002465 |
| Streptococcus suis P1/7 | AM946016 | AM946016 | AM946016 |
| Streptococcus suis SC84 | FM252031 | FM252031 | FM252031 |
| Streptococcus thermophilus CNRZ1066 | CP000024 | CP000024 | CP000024 |
| Streptococcus thermophilus LMD-9 | Chromosome, Plasmid 1, Plasmid 2 | Chromosome, Plasmid 1, Plasmid 2 | Chromosome, Plasmid 1, Plasmid 2 |
| Streptococcus thermophilus LMG 18311 | CP000023 | CP000023 | CP000023 |
| Streptococcus thermophilus ND03 | CP002340 | CP002340 | CP002340 |
| Streptococcus uberis 0140J | AM946015 | AM946015 | AM946015 |
| Streptomyces avermitilis MA-4680 | Chromosome, Plasmid SAP1 | Chromosome, Plasmid SAP1 | Chromosome, Plasmid SAP1 |
| Streptomyces bingchenggensis BCW-1 | CP002047 | CP002047 | CP002047 |
| Streptomyces coelicolor A3(2) | Chromosome, Plasmid SCP1, Plasmid SCP2 | Chromosome, Plasmid SCP1, Plasmid SCP2 | Chromosome, Plasmid SCP1, Plasmid SCP2 |
| Streptomyces flavogriseus ATCC 33331 | CP002475 | CP002475 | CP002475 |
| Streptomyces griseus subsp. griseus NBRC 13350 | AP009493 | AP009493 | AP009493 |
| Streptomyces scabiei 87.22 | FN554889 | FN554889 | FN554889 |
| Streptosporangium roseum DSM 43021 | Chromosome, Plasmid pSROS01 | Chromosome, Plasmid pSROS01 | Chromosome, Plasmid pSROS01 |
| Sulfolobus acidocaldarius DSM 639 | CP000077 | CP000077 | CP000077 |
| Sulfolobus islandicus HVE10/4 | CP002426 | CP002426 | CP002426 |
| Sulfolobus islandicus L.D.8.5 | Chromosome, Plasmid pLD8501 | Chromosome, Plasmid pLD8501 | Chromosome, Plasmid pLD8501 |
| Sulfolobus islandicus L.S.2.15 | CP001399 | CP001399 | CP001399 |
| Sulfolobus islandicus M.14.25 | CP001400 | CP001400 | CP001400 |
| Sulfolobus islandicus M.16.27 | CP001401 | CP001401 | CP001401 |
| Sulfolobus islandicus M.16.4 | CP001402 | CP001402 | CP001402 |
| Sulfolobus islandicus REY15A | CP002425 | CP002425 | CP002425 |
| Sulfolobus islandicus Y.G.57.14 | CP001403 | CP001403 | CP001403 |
| Sulfolobus islandicus Y.N.15.51 | Chromosome, Plasmid pYN01 | Chromosome, Plasmid pYN01 | Chromosome, Plasmid pYN01 |
| Sulfolobus solfataricus 98/2 | CP001800 | CP001800 | CP001800 |
| Sulfolobus solfataricus P2 | AE006641 | AE006641 | AE006641 |
| Sulfolobus tokodaii str. 7 | BA000023 | BA000023 | BA000023 |
| Sulfuricurvum kujiense DSM 16994 | Chromosome, Plasmid pSULKU01, Plasmid pSULKU02, Plasmid pSULKU03, Plasmid pSULKU04 | Chromosome, Plasmid pSULKU01, Plasmid pSULKU02, Plasmid pSULKU03, Plasmid pSULKU04 | Chromosome, Plasmid pSULKU01, Plasmid pSULKU02, Plasmid pSULKU03, Plasmid pSULKU04 |
| Sulfurihydrogenibium azorense Az-Fu1 | CP001229 | CP001229 | CP001229 |
| Sulfurihydrogenibium sp. YO3AOP1 | CP001080 | CP001080 | CP001080 |
| Sulfurimonas autotrophica DSM 16294 | CP002205 | CP002205 | CP002205 |
| Sulfurimonas denitrificans DSM 1251 | CP000153 | CP000153 | CP000153 |
| Sulfurospirillum deleyianum DSM 6946 | CP001816 | CP001816 | CP001816 |
| Sulfurovum sp. NBC37-1 | AP009179 | AP009179 | AP009179 |
| Symbiobacterium thermophilum IAM 14863 | AP006840 | AP006840 | AP006840 |
| Synechococcus elongatus PCC 6301 | AP008231 | AP008231 | AP008231 |
| Synechococcus elongatus PCC 7942 | Chromosome, Plasmid 1 | Chromosome, Plasmid 1 | Chromosome, Plasmid 1 |
| Synechococcus sp. CC9311 | CP000435 | CP000435 | CP000435 |
| Synechococcus sp. CC9605 | CP000110 | CP000110 | CP000110 |
| Synechococcus sp. CC9902 | CP000097 | CP000097 | CP000097 |
| Synechococcus sp. JA-2-3B'a(2-13) | CP000240 | CP000240 | CP000240 |
| Synechococcus sp. JA-3-3Ab | CP000239 | CP000239 | CP000239 |
| Synechococcus sp. PCC 7002 | Chromosome, Plasmid pAQ1, Plasmid pAQ3, Plasmid pAQ4, Plasmid pAQ5, Plasmid pAQ6, Plasmid pAQ7 | Chromosome, Plasmid pAQ1, Plasmid pAQ3, Plasmid pAQ4, Plasmid pAQ5, Plasmid pAQ6, Plasmid pAQ7 | Chromosome, Plasmid pAQ1, Plasmid pAQ3, Plasmid pAQ4, Plasmid pAQ5, Plasmid pAQ6, Plasmid pAQ7 |
| Synechococcus sp. RCC307 | CT978603 | CT978603 | CT978603 |
| Synechococcus sp. WH 7803 | CT971583 | CT971583 | CT971583 |
| Synechococcus sp. WH 8102 | BX548020 | BX548020 | BX548020 |
| Synechocystis sp. PCC 6803 | Plasmid pSYSG, Plasmid pSYSX, Plasmid pSYSM, Chromosome, Plasmid pSYSA | Plasmid pSYSG, Plasmid pSYSX, Plasmid pSYSM, Chromosome, Plasmid pSYSA | Plasmid pSYSG, Plasmid pSYSX, Plasmid pSYSM, Chromosome, Plasmid pSYSA |
| Synergistetes bacterium SGP1 | FP929056 | FP929056 | FP929056 |
| Syntrophobacter fumaroxidans MPOB | CP000478 | CP000478 | CP000478 |
| Syntrophobotulus glycolicus DSM 8271 | CP002547 | CP002547 | CP002547 |
| Syntrophomonas wolfei subsp. wolfei str. Goettingen | CP000448 | CP000448 | CP000448 |
| Syntrophothermus lipocalidus DSM 12680 | CP002048 | CP002048 | CP002048 |
| Syntrophus aciditrophicus SB | CP000252 | CP000252 | CP000252 |
| Taylorella equigenitalis MCE9 | CP002456 | CP002456 | CP002456 |
| Teredinibacter turnerae T7901 | CP001614 | CP001614 | CP001614 |
| Terriglobus saanensis SP1PR4 | CP002467 | CP002467 | CP002467 |
| Thauera sp. MZ1T | Chromosome, Plasmid pTha01 | Chromosome, Plasmid pTha01 | Chromosome, Plasmid pTha01 |
| Thermaerobacter marianensis DSM 12885 | CP002344 | CP002344 | CP002344 |
| Thermanaerovibrio acidaminovorans DSM 6589 | CP001818 | CP001818 | CP001818 |
| Thermincola potens JR | CP002028 | CP002028 | CP002028 |
| Thermoanaerobacter brockii subsp. finnii Ako-1 | CP002466 | CP002466 | CP002466 |
| Thermoanaerobacter italicus Ab9 | CP001936 | CP001936 | CP001936 |
| Thermoanaerobacter mathranii subsp. mathranii str. A3 | CP002032 | CP002032 | CP002032 |
| Thermoanaerobacter pseudethanolicus ATCC 33223 | CP000924 | CP000924 | CP000924 |
| Thermoanaerobacter sp. X513 | CP002210 | CP002210 | CP002210 |
| Thermoanaerobacter sp. X514 | CP000923 | CP000923 | CP000923 |
| Thermoanaerobacter tengcongensis MB4 | AE008691 | AE008691 | AE008691 |
| Thermoanaerobacterium thermosaccharolyticum DSM 571 | CP002171 | CP002171 | CP002171 |
| Thermobaculum terrenum ATCC BAA-798 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Thermobifida fusca YX | CP000088 | CP000088 | CP000088 |
| Thermobispora bispora DSM 43833 | CP001874 | CP001874 | CP001874 |
| Thermococcus barophilus MP | Chromosome, Plasmid pTBMP1 | Chromosome, Plasmid pTBMP1 | Chromosome, Plasmid pTBMP1 |
| Thermococcus gammatolerans EJ3 | CP001398 | CP001398 | CP001398 |
| Thermococcus kodakarensis KOD1 | AP006878 | AP006878 | AP006878 |
| Thermococcus onnurineus NA1 | CP000855 | CP000855 | CP000855 |
| Thermococcus sibiricus MM 739 | CP001463 | CP001463 | CP001463 |
| Thermocrinis albus DSM 14484 | CP001931 | CP001931 | CP001931 |
| Thermodesulfovibrio yellowstonii DSM 11347 | CP001147 | CP001147 | CP001147 |
| Thermofilum pendens Hrk 5 | Chromosome, Plasmid pTPEN01 | Chromosome, Plasmid pTPEN01 | Chromosome, Plasmid pTPEN01 |
| Thermomicrobium roseum DSM 5159 | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Thermomonospora curvata DSM 43183 | CP001738 | CP001738 | CP001738 |
| Thermoplasma acidophilum DSM 1728 | AL139299 | AL139299 | AL139299 |
| Thermoplasma volcanium GSS1 | BA000011 | BA000011 | BA000011 |
| Thermoproteus neutrophilus V24Sta | CP001014 | CP001014 | CP001014 |
| Thermosediminibacter oceani DSM 16646 | CP002131 | CP002131 | CP002131 |
| Thermosipho africanus TCF52B | CP001185 | CP001185 | CP001185 |
| Thermosipho melanesiensis BI429 | CP000716 | CP000716 | CP000716 |
| Thermosphaera aggregans DSM 11486 | CP001939 | CP001939 | CP001939 |
| Thermosynechococcus elongatus BP-1 | BA000039 | BA000039 | BA000039 |
| Thermotoga lettingae TMO | CP000812 | CP000812 | CP000812 |
| Thermotoga maritima MSB8 | AE000512 | AE000512 | AE000512 |
| Thermotoga naphthophila RKU-10 | CP001839 | CP001839 | CP001839 |
| Thermotoga neapolitana DSM 4359 | CP000916 | CP000916 | CP000916 |
| Thermotoga petrophila RKU-1 | CP000702 | CP000702 | CP000702 |
| Thermotoga sp. RQ2 | CP000969 | CP000969 | CP000969 |
| Thermovibrio ammonificans HB-1 | Chromosome, Plasmid pTHEAM01 | Chromosome, Plasmid pTHEAM01 | Chromosome, Plasmid pTHEAM01 |
| Thermus scotoductus SA-01 | Chromosome, Plasmid pTSC8 | Chromosome, Plasmid pTSC8 | Chromosome, Plasmid pTSC8 |
| Thermus thermophilus HB27 | Chromosome, Plasmid pTT27 | Chromosome, Plasmid pTT27 | Chromosome, Plasmid pTT27 |
| Thermus thermophilus HB8 | Chromosome, Plasmid pTT8, Plasmid pTT27 | Chromosome, Plasmid pTT8, Plasmid pTT27 | Chromosome, Plasmid pTT8, Plasmid pTT27 |
| Thioalkalivibrio sp. HL-EbGR7 | CP001339 | CP001339 | CP001339 |
| Thioalkalivibrio sp. K90mix | Chromosome, Plasmid pTK9001 | Chromosome, Plasmid pTK9001 | Chromosome, Plasmid pTK9001 |
| Thiobacillus denitrificans ATCC 25259 | CP000116 | CP000116 | CP000116 |
| Thiomicrospira crunogena XCL-2 | CP000109 | CP000109 | CP000109 |
| Thiomonas intermedia K12 | Chromosome, Plasmid pTINT01, Plasmid pTINT02 | Chromosome, Plasmid pTINT01, Plasmid pTINT02 | Chromosome, Plasmid pTINT01, Plasmid pTINT02 |
| Tolumonas auensis DSM 9187 | CP001616 | CP001616 | CP001616 |
| Treponema denticola ATCC 35405 | AE017226 | AE017226 | AE017226 |
| Treponema pallidum subsp. pallidum SS14 | CP000805 | CP000805 | CP000805 |
| Treponema pallidum subsp. pallidum str. Chicago | CP001752 | CP001752 | CP001752 |
| Treponema pallidum subsp. pallidum str. Nichols | AE000520 | AE000520 | AE000520 |
| Trichodesmium erythraeum IMS101 | CP000393 | CP000393 | CP000393 |
| Tropheryma whipplei TW08/27 | BX072543 | BX072543 | BX072543 |
| Tropheryma whipplei str. Twist | AE014184 | AE014184 | AE014184 |
| Truepera radiovictrix DSM 17093 | CP002049 | CP002049 | CP002049 |
| Tsukamurella paurometabola DSM 20162 | Chromosome, Plasmid pTpau01 | Chromosome, Plasmid pTpau01 | Chromosome, Plasmid pTpau01 |
| Ureaplasma parvum serovar 3 str. ATCC 27815 | CP000942 | CP000942 | CP000942 |
| Ureaplasma parvum serovar 3 str. ATCC 700970 | AF222894 | AF222894 | AF222894 |
| Ureaplasma urealyticum serovar 10 str. ATCC 33699 | CP001184 | CP001184 | CP001184 |
| Variovorax paradoxus EPS | CP002417 | CP002417 | CP002417 |
| Variovorax paradoxus S110 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Veillonella parvula DSM 2008 | CP001820 | CP001820 | CP001820 |
| Verminephrobacter eiseniae EF01-2 | Chromosome, Plasmid pVEIS01 | Chromosome, Plasmid pVEIS01 | Chromosome, Plasmid pVEIS01 |
| Vibrio cholerae Ban5 | GQ463140 | GQ463140 | GQ463140 |
| Vibrio cholerae Ind4 | GQ463141 | GQ463141 | GQ463141 |
| Vibrio cholerae Ind5 | GQ463142 | GQ463142 | GQ463142 |
| Vibrio cholerae M66-2 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Vibrio cholerae MJ-1236 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Vibrio cholerae Mex1 | GQ463143 | GQ463143 | GQ463143 |
| Vibrio cholerae O1 biovar El Tor str. N16961 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Vibrio cholerae O395 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Vibrio cholerae O395 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Vibrio fischeri ES114 | Chromosome I, Chromosome II, Plasmid pES100 | Chromosome I, Chromosome II, Plasmid pES100 | Chromosome I, Chromosome II, Plasmid pES100 |
| Vibrio fischeri MJ11 | Chromosome II, Chromosome I, Plasmid pMJ100 | Chromosome II, Chromosome I, Plasmid pMJ100 | Chromosome II, Chromosome I, Plasmid pMJ100 |
| Vibrio fluvialis Ind1 | GQ463144 | GQ463144 | GQ463144 |
| Vibrio furnissii NCTC 11218 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Vibrio harveyi ATCC BAA-1116 | Chromosome I, Chromosome II, Plasmid pVIBHAR | Chromosome I, Chromosome II, Plasmid pVIBHAR | Chromosome I, Chromosome II, Plasmid pVIBHAR |
| Vibrio parahaemolyticus RIMD 2210633 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Vibrio sp. Ex25 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Vibrio splendidus LGP32 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 | Chromosome 1, Chromosome 2 |
| Vibrio vulnificus CMCP6 | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Vibrio vulnificus MO6-24/O | Chromosome I, Chromosome II | Chromosome I, Chromosome II | Chromosome I, Chromosome II |
| Vibrio vulnificus YJ016 | Chromosome I, Chromosome II, Plasmid pYJ016 | Chromosome I, Chromosome II, Plasmid pYJ016 | Chromosome I, Chromosome II, Plasmid pYJ016 |
| Vulcanisaeta distributa DSM 14429 | CP002100 | CP002100 | CP002100 |
| Vulcanisaeta moutnovskia 768-28 | CP002529 | CP002529 | CP002529 |
| Waddlia chondrophila WSU 86-1044 | Chromosome, Plasmid pWc | Chromosome, Plasmid pWc | Chromosome, Plasmid pWc |
| Weeksella virosa DSM 16922 | CP002455 | CP002455 | CP002455 |
| Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis | Chromosome, Plasmid pWb1 | Chromosome, Plasmid pWb1 | Chromosome, Plasmid pWb1 |
| Wolbachia endosymbiont of Culex quinquefasciatus Pel | AM999887 | AM999887 | AM999887 |
| Wolbachia endosymbiont of Drosophila melanogaster | AE017196 | AE017196 | AE017196 |
| Wolbachia endosymbiont strain TRS of Brugia malayi | AE017321 | AE017321 | AE017321 |
| Wolbachia sp. wRi | CP001391 | CP001391 | CP001391 |
| Wolinella succinogenes DSM 1740 | BX571656 | BX571656 | BX571656 |
| Xanthobacter autotrophicus Py2 | Chromosome, Plasmid pXAUT01 | Chromosome, Plasmid pXAUT01 | Chromosome, Plasmid pXAUT01 |
| Xanthomonas axonopodis pv. citri str. 306 | Chromosome, Plasmid pXAC33, Plasmid pXAC64 | Chromosome, Plasmid pXAC33, Plasmid pXAC64 | Chromosome, Plasmid pXAC33, Plasmid pXAC64 |
| Xanthomonas campestris pv. campestris str. 8004 | CP000050 | CP000050 | CP000050 |
| Xanthomonas campestris pv. campestris str. ATCC 33913 | AE008922 | AE008922 | AE008922 |
| Xanthomonas campestris pv. campestris str. B100 | AM920689 | AM920689 | AM920689 |
| Xanthomonas campestris pv. vesicatoria str. 85-10 | Chromosome, Plasmid pXCV2, Plasmid pXCV19, Plasmid pXCV38, Plasmid pXCV183 | Chromosome, Plasmid pXCV2, Plasmid pXCV19, Plasmid pXCV38, Plasmid pXCV183 | Chromosome, Plasmid pXCV2, Plasmid pXCV19, Plasmid pXCV38, Plasmid pXCV183 |
| Xanthomonas oryzae pv. oryzae KACC10331 | AE013598 | AE013598 | AE013598 |
| Xanthomonas oryzae pv. oryzae MAFF 311018 | AP008229 | AP008229 | AP008229 |
| Xanthomonas oryzae pv. oryzae PXO99A | CP000967 | CP000967 | CP000967 |
| Xenorhabdus bovienii SS-2004 | FN667741 | FN667741 | FN667741 |
| Xenorhabdus nematophila ATCC 19061 | Chromosome ANONYMOUS, Plasmid XNC1_p | Chromosome ANONYMOUS, Plasmid XNC1_p | Chromosome ANONYMOUS, Plasmid XNC1_p |
| Xylanimonas cellulosilytica DSM 15894 | Chromosome, Plasmid pXCEL01 | Chromosome, Plasmid pXCEL01 | Chromosome, Plasmid pXCEL01 |
| Xylella fastidiosa 9a5c | Chromosome, Plasmid pXF1.3, Plasmid pXF51 | Chromosome, Plasmid pXF1.3, Plasmid pXF51 | Chromosome, Plasmid pXF1.3, Plasmid pXF51 |
| Xylella fastidiosa M12 | CP000941 | CP000941 | CP000941 |
| Xylella fastidiosa M23 | Chromosome, Plasmid pXFAS01 | Chromosome, Plasmid pXFAS01 | Chromosome, Plasmid pXFAS01 |
| Xylella fastidiosa Temecula1 | Chromosome, Plasmid pXFPD1.3 | Chromosome, Plasmid pXFPD1.3 | Chromosome, Plasmid pXFPD1.3 |
| Xylella fastidiosa subsp. fastidiosa GB514 | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed | Chromosome, Plasmid unnamed |
| Yersinia enterocolitica subsp. enterocolitica 8081 | Chromosome, Plasmid pYVe8081 | Chromosome, Plasmid pYVe8081 | Chromosome, Plasmid pYVe8081 |
| Yersinia pestis Angola | Chromosome, Plasmid pMT-pPCP, Plasmid new_pCD | Chromosome, Plasmid pMT-pPCP, Plasmid new_pCD | Chromosome, Plasmid pMT-pPCP, Plasmid new_pCD |
| Yersinia pestis Antiqua | Chromosome, Plasmid pPCP, Plasmid pCD, Plasmid pMT | Chromosome, Plasmid pPCP, Plasmid pCD, Plasmid pMT | Chromosome, Plasmid pPCP, Plasmid pCD, Plasmid pMT |
| Yersinia pestis CO92 | Chromosome, Plasmid pCD1, Plasmid pPCP1, Plasmid pMT1 | Chromosome, Plasmid pCD1, Plasmid pPCP1, Plasmid pMT1 | Chromosome, Plasmid pCD1, Plasmid pPCP1, Plasmid pMT1 |
| Yersinia pestis D106004 | Chromosome, Plasmid pMT1, Plasmid pPCY1, Plasmid pCD1 | Chromosome, Plasmid pMT1, Plasmid pPCY1, Plasmid pCD1 | Chromosome, Plasmid pMT1, Plasmid pPCY1, Plasmid pCD1 |
| Yersinia pestis D182038 | Chromosome, Plasmid pMT1, Plasmid pPCP1, Plasmid pCD1 | Chromosome, Plasmid pMT1, Plasmid pPCP1, Plasmid pCD1 | Chromosome, Plasmid pMT1, Plasmid pPCP1, Plasmid pCD1 |
| Yersinia pestis KIM 10 | Chromosome, Plasmid pMT-1 | Chromosome, Plasmid pMT-1 | Chromosome, Plasmid pMT-1 |
| Yersinia pestis Nepal516 | Chromosome, Plasmid pMT, Plasmid pPCP | Chromosome, Plasmid pMT, Plasmid pPCP | Chromosome, Plasmid pMT, Plasmid pPCP |
| Yersinia pestis Pestoides F | Chromosome, Plasmid MT, Plasmid CD | Chromosome, Plasmid MT, Plasmid CD | Chromosome, Plasmid MT, Plasmid CD |
| Yersinia pestis Z176003 | Plasmid pMT1, Plasmid pPCP1, Plasmid pCD1, Chromosome | Plasmid pMT1, Plasmid pPCP1, Plasmid pCD1, Chromosome | Plasmid pMT1, Plasmid pPCP1, Plasmid pCD1, Chromosome |
| Yersinia pestis biovar Medievalis str. Harbin 35 | Chromosome, Plasmid pCD, Plasmid pMT, Plasmid pPCP | Chromosome, Plasmid pCD, Plasmid pMT, Plasmid pPCP | Chromosome, Plasmid pCD, Plasmid pMT, Plasmid pPCP |
| Yersinia pestis biovar Microtus str. 91001 | Chromosome, Plasmid pCD1, Plasmid pCRY, Plasmid pMT1, Plasmid pPCP1 | Chromosome, Plasmid pCD1, Plasmid pCRY, Plasmid pMT1, Plasmid pPCP1 | Chromosome, Plasmid pCD1, Plasmid pCRY, Plasmid pMT1, Plasmid pPCP1 |
| Yersinia pseudotuberculosis IP 31758 | Chromosome, Plasmid_153kb, Plasmid_59kb | Chromosome, Plasmid_153kb, Plasmid_59kb | Chromosome, Plasmid_153kb, Plasmid_59kb |
| Yersinia pseudotuberculosis IP 32953 | Chromosome, Plasmid pYptb32953, Plasmid pYV | Chromosome, Plasmid pYptb32953, Plasmid pYV | Chromosome, Plasmid pYptb32953, Plasmid pYV |
| Yersinia pseudotuberculosis PB1/+ | Chromosome, Plasmid pYPTS01 | Chromosome, Plasmid pYPTS01 | Chromosome, Plasmid pYPTS01 |
| Yersinia pseudotuberculosis YPIII | CP000950 | CP000950 | CP000950 |
| Zunongwangia profunda SM-A87 | CP001650 | CP001650 | CP001650 |
| Zymomonas mobilis subsp. mobilis NCIMB 11163 | Chromosome, Plasmid pZA1001, Plasmid pZA1002, Plasmid pZA1003 | Chromosome, Plasmid pZA1001, Plasmid pZA1002, Plasmid pZA1003 | Chromosome, Plasmid pZA1001, Plasmid pZA1002, Plasmid pZA1003 |
| Zymomonas mobilis subsp. mobilis ZM4 | AE008692 | AE008692 | AE008692 |
| butyrate-producing bacterium SM4/1 | FP929060 | FP929060 | FP929060 |
| butyrate-producing bacterium SS3/4 | FP929062 | FP929062 | FP929062 |
| butyrate-producing bacterium SSC/2 | FP929061 | FP929061 | FP929061 |
| cyanobacterium UCYN-A | CP001842 | CP001842 | CP001842 |
| marine bacterium HP15 | Chromosome, Plasmid pHP-42, Plasmid pHP-187 | Chromosome, Plasmid pHP-42, Plasmid pHP-187 | Chromosome, Plasmid pHP-42, Plasmid pHP-187 |
| uncultured Termite group 1 bacterium phylotype Rs-D17 | Chromosome, Plasmid pTGRD1, Plasmid pTGRD2, Plasmid pTGRD3 | Chromosome, Plasmid pTGRD1, Plasmid pTGRD2, Plasmid pTGRD3 | Chromosome, Plasmid pTGRD1, Plasmid pTGRD2, Plasmid pTGRD3 |
| uncultured methanogenic archaeon RC-I | AM114193 | AM114193 | AM114193 |