Prodigal Downloads: Gene Predictions for All of Microbial Genbank

The following files are available for download:

prodigal.v1_20.tar.gz - Prodigal v1.20 Source Code Tarball
prodigal.v1_20.zip - Prodigal v1.20 Source Code Zip
prodigal.v1_20.linux - Prodigal v1.20 Precompiled Linux Binary
prodigal.v1_20.macosx - Prodigal v1.20 Precompiled MacOSX Binary
prodigal.v1_20.win32.exe - Prodigal v1.20 Precompiled Win32 Binary
draft_prodigal.pl - Perl script for running Prodigal on draft.
compare.pl - Perl script that compares two gene files in Genbank format and prints information about sensitivity, specificity, accuracy, etc.
Ecogene Verified Starts - The set of Ecogene genes with verified gene starts in Genbank format.
colorprod.pl - Simple Perl script to add color tags to a Prodigal output file for use with a visualizer such as Artemis.

In addition, Prodigal has been run on all the completed microbial genomes in Genbank. These results are available below.

Prodigal Analysis of Completed Microbial Genomes (September, 2009)
Genome	Genbank Files	Prodigal Files (Coordinates)	Prodigal Fasta Translations
Acaryochloris marina MBIC11017	Chromosome, Plasmid pREB1, Plasmid pREB2, Plasmid pREB3, Plasmid pREB4, Plasmid pREB5, Plasmid pREB6, Plasmid pREB7, Plasmid pREB8, Plasmid pREB9	Chromosome, Plasmid pREB1, Plasmid pREB2, Plasmid pREB3, Plasmid pREB4, Plasmid pREB5, Plasmid pREB6, Plasmid pREB7, Plasmid pREB8, Plasmid pREB9	Chromosome, Plasmid pREB1, Plasmid pREB2, Plasmid pREB3, Plasmid pREB4, Plasmid pREB5, Plasmid pREB6, Plasmid pREB7, Plasmid pREB8, Plasmid pREB9
Acholeplasma laidlawii PG-8A	NC_010163	NC_010163	NC_010163
Acidimicrobium ferrooxidans DSM 10331	NC_013124	NC_013124	NC_013124
Acidiphilium cryptum JF-5	Plasmid pACRY01, Chromosome, Plasmid pACRY02, Plasmid pACRY03, Plasmid pACRY04, Plasmid pACRY05, Plasmid pACRY06, Plasmid pACRY07, Plasmid pACRY08	Plasmid pACRY01, Chromosome, Plasmid pACRY02, Plasmid pACRY03, Plasmid pACRY04, Plasmid pACRY05, Plasmid pACRY06, Plasmid pACRY07, Plasmid pACRY08	Plasmid pACRY01, Chromosome, Plasmid pACRY02, Plasmid pACRY03, Plasmid pACRY04, Plasmid pACRY05, Plasmid pACRY06, Plasmid pACRY07, Plasmid pACRY08
Acidithiobacillus ferrooxidans ATCC 23270	NC_011761	NC_011761	NC_011761
Acidithiobacillus ferrooxidans ATCC 53993	NC_011206	NC_011206	NC_011206
Acidobacterium capsulatum ATCC 51196	NC_012483	NC_012483	NC_012483
Acidothermus cellulolyticus 11B	NC_008578	NC_008578	NC_008578
Acidovorax citrulli AAC00-1	NC_008752	NC_008752	NC_008752
Acidovorax sp. JS42	Plasmid pAOVO01, Chromosome, Plasmid pAOVO02	Plasmid pAOVO01, Chromosome, Plasmid pAOVO02	Plasmid pAOVO01, Chromosome, Plasmid pAOVO02
Acinetobacter baumannii AB0057	Chromosome, Plasmid pAB0057	Chromosome, Plasmid pAB0057	Chromosome, Plasmid pAB0057
Acinetobacter baumannii AB307-0294	NC_011595	NC_011595	NC_011595
Acinetobacter baumannii ACICU	Chromosome, Plasmid pACICU1, Plasmid pACICU2	Chromosome, Plasmid pACICU1, Plasmid pACICU2	Chromosome, Plasmid pACICU1, Plasmid pACICU2
Acinetobacter baumannii ATCC 17978	Plasmid pAB1, Chromosome, Plasmid pAB2	Plasmid pAB1, Chromosome, Plasmid pAB2	Plasmid pAB1, Chromosome, Plasmid pAB2
Acinetobacter baumannii AYE	Chromosome CU459141, Plasmid p1ABAYE, Plasmid p2ABAYE, Plasmid p4ABAYE, Plasmid p3ABAYE	Chromosome CU459141, Plasmid p1ABAYE, Plasmid p2ABAYE, Plasmid p4ABAYE, Plasmid p3ABAYE	Chromosome CU459141, Plasmid p1ABAYE, Plasmid p2ABAYE, Plasmid p4ABAYE, Plasmid p3ABAYE
Acinetobacter baumannii SDF	Chromosome CU468230, Plasmid p1ABSDF, Plasmid p2ABSDF, Plasmid p3ABSDF	Chromosome CU468230, Plasmid p1ABSDF, Plasmid p2ABSDF, Plasmid p3ABSDF	Chromosome CU468230, Plasmid p1ABSDF, Plasmid p2ABSDF, Plasmid p3ABSDF
Acinetobacter sp. ADP1	NC_005966	NC_005966	NC_005966
Actinobacillus pleuropneumoniae L20	NC_009053	NC_009053	NC_009053
Actinobacillus pleuropneumoniae serovar 3 str. JL03	NC_010278	NC_010278	NC_010278
Actinobacillus pleuropneumoniae serovar 7 str. AP76	Chromosome, Plasmid APP7_C, Plasmid ABB7_B, Plasmid APP7_A	Chromosome, Plasmid APP7_C, Plasmid ABB7_B, Plasmid APP7_A	Chromosome, Plasmid APP7_C, Plasmid ABB7_B, Plasmid APP7_A
Actinobacillus succinogenes 130Z	NC_009655	NC_009655	NC_009655
Actinosynnema mirum DSM 43827	NC_013093	NC_013093	NC_013093
Aeromonas hydrophila subsp. hydrophila ATCC 7966	NC_008570	NC_008570	NC_008570
Aeromonas salmonicida subsp. salmonicida A449	Chromosome, Plasmid pAsa1, Plasmid pAsa2, Plasmid pAsa3, Plasmid 4, Plasmid 5	Chromosome, Plasmid pAsa1, Plasmid pAsa2, Plasmid pAsa3, Plasmid 4, Plasmid 5	Chromosome, Plasmid pAsa1, Plasmid pAsa2, Plasmid pAsa3, Plasmid 4, Plasmid 5
Aeropyrum pernix K1	NC_000854	NC_000854	NC_000854
Aggregatibacter aphrophilus NJ8700	NC_012913	NC_012913	NC_012913
Agrobacterium radiobacter K84	Chromosome 1, Plasmid pAtK84b, Chromosome 2, Plasmid pAtK84c, Plasmid pAgK84	Chromosome 1, Plasmid pAtK84b, Chromosome 2, Plasmid pAtK84c, Plasmid pAgK84	Chromosome 1, Plasmid pAtK84b, Chromosome 2, Plasmid pAtK84c, Plasmid pAgK84
Agrobacterium tumefaciens str. C58	Chromosome circular, Chromosome linear, Plasmid AT, Plasmid Ti	Chromosome circular, Chromosome linear, Plasmid AT, Plasmid Ti	Chromosome circular, Chromosome linear, Plasmid AT, Plasmid Ti
Agrobacterium vitis S4	Chromosome 1, Plasmid pAtS4b, Chromosome 2, Plasmid pAtS4c, Plasmid pTiS4, Plasmid pAtS4e, Plasmid pAtS4a	Chromosome 1, Plasmid pAtS4b, Chromosome 2, Plasmid pAtS4c, Plasmid pTiS4, Plasmid pAtS4e, Plasmid pAtS4a	Chromosome 1, Plasmid pAtS4b, Chromosome 2, Plasmid pAtS4c, Plasmid pTiS4, Plasmid pAtS4e, Plasmid pAtS4a
Akkermansia muciniphila ATCC BAA-835	NC_010655	NC_010655	NC_010655
Alcanivorax borkumensis SK2	NC_008260	NC_008260	NC_008260
Aliivibrio salmonicida LFI1238	Chromosome 1, Chromosome 2, Plasmid pVSAL320, Plasmid pVSAL840, Plasmid pVAL43, Plasmid pVSAL43	Chromosome 1, Chromosome 2, Plasmid pVSAL320, Plasmid pVSAL840, Plasmid pVAL43, Plasmid pVSAL43	Chromosome 1, Chromosome 2, Plasmid pVSAL320, Plasmid pVSAL840, Plasmid pVAL43, Plasmid pVSAL43
Alkalilimnicola ehrlichii MLHE-1	NC_008340	NC_008340	NC_008340
Alkaliphilus metalliredigens QYMF	NC_009633	NC_009633	NC_009633
Alkaliphilus oremlandii OhILAs	NC_009922	NC_009922	NC_009922
Alteromonas macleodii 'Deep ecotype'	NC_011138	NC_011138	NC_011138
Anabaena variabilis ATCC 29413	Chromosome, Plasmid A, Plasmid B, Plasmid C	Chromosome, Plasmid A, Plasmid B, Plasmid C	Chromosome, Plasmid A, Plasmid B, Plasmid C
Anaerocellum thermophilum DSM 6725	Chromosome, Plasmid pATHE01, Plasmid pATHE02	Chromosome, Plasmid pATHE01, Plasmid pATHE02	Chromosome, Plasmid pATHE01, Plasmid pATHE02
Anaerococcus prevotii DSM 20548	Chromosome, Plasmid pAPRE01	Chromosome, Plasmid pAPRE01	Chromosome, Plasmid pAPRE01
Anaeromyxobacter dehalogenans 2CP-1	NC_011891	NC_011891	NC_011891
Anaeromyxobacter dehalogenans 2CP-C	NC_007760	NC_007760	NC_007760
Anaeromyxobacter sp. Fw109-5	NC_009675	NC_009675	NC_009675
Anaeromyxobacter sp. K	NC_011145	NC_011145	NC_011145
Anaplasma marginale str. Florida	NC_012026	NC_012026	NC_012026
Anaplasma marginale str. St. Maries	NC_004842	NC_004842	NC_004842
Anaplasma phagocytophilum HZ	NC_007797	NC_007797	NC_007797
Anoxybacillus flavithermus WK1	NC_011567	NC_011567	NC_011567
Aquifex aeolicus VF5	Chromosome, Plasmid ece1	Chromosome, Plasmid ece1	Chromosome, Plasmid ece1
Archaeoglobus fulgidus DSM 4304	NC_000917	NC_000917	NC_000917
Arcobacter butzleri RM4018	NC_009850	NC_009850	NC_009850
Aromatoleum aromaticum EbN1	Chromosome, Plasmid 1, Plasmid 2	Chromosome, Plasmid 1, Plasmid 2	Chromosome, Plasmid 1, Plasmid 2
Arthrobacter aurescens TC1	Plasmid TC1, Chromosome, Plasmid TC2	Plasmid TC1, Chromosome, Plasmid TC2	Plasmid TC1, Chromosome, Plasmid TC2
Arthrobacter chlorophenolicus A6	Chromosome, Plasmid pACHL01, Plasmid pACHL02	Chromosome, Plasmid pACHL01, Plasmid pACHL02	Chromosome, Plasmid pACHL01, Plasmid pACHL02
Arthrobacter sp. FB24	Plasmid 1, Chromosome 1, Plasmid 2, Plasmid 3	Plasmid 1, Chromosome 1, Plasmid 2, Plasmid 3	Plasmid 1, Chromosome 1, Plasmid 2, Plasmid 3
Aster yellows witches'-broom phytoplasma AYWB	Chromosome, Plasmid pAYWB-I, Plasmid pAYWB-II, Plasmid pAYWB-III, Plasmid pAYWB-IV	Chromosome, Plasmid pAYWB-I, Plasmid pAYWB-II, Plasmid pAYWB-III, Plasmid pAYWB-IV	Chromosome, Plasmid pAYWB-I, Plasmid pAYWB-II, Plasmid pAYWB-III, Plasmid pAYWB-IV
Azoarcus sp. BH72	NC_008702	NC_008702	NC_008702
Azorhizobium caulinodans ORS 571	NC_009937	NC_009937	NC_009937
Azotobacter vinelandii DJ	NC_012560	NC_012560	NC_012560
Bacillus amyloliquefaciens FZB42	NC_009725	NC_009725	NC_009725
Bacillus anthracis str. 'Ames Ancestor'	Chromosome, Plasmid pXO2, Plasmid pXO1	Chromosome, Plasmid pXO2, Plasmid pXO1	Chromosome, Plasmid pXO2, Plasmid pXO1
Bacillus anthracis str. A0248	Plasmid pXO2, Chromosome, Plasmid pXO1	Plasmid pXO2, Chromosome, Plasmid pXO1	Plasmid pXO2, Chromosome, Plasmid pXO1
Bacillus anthracis str. Ames	NC_003997	NC_003997	NC_003997
Bacillus anthracis str. CDC 684	Plasmid pX02, Chromosome, Plasmid pX01	Plasmid pX02, Chromosome, Plasmid pX01	Plasmid pX02, Chromosome, Plasmid pX01
Bacillus anthracis str. Sterne	NC_005945	NC_005945	NC_005945
Bacillus cereus 03BB102	Plasmid p03BB102_179, Chromosome	Plasmid p03BB102_179, Chromosome	Plasmid p03BB102_179, Chromosome
Bacillus cereus AH187	Chromosome, Plasmid pAH187_12, Plasmid pAH187_270, Plasmid pAH187_45, Plasmid pAH187_3	Chromosome, Plasmid pAH187_12, Plasmid pAH187_270, Plasmid pAH187_45, Plasmid pAH187_3	Chromosome, Plasmid pAH187_12, Plasmid pAH187_270, Plasmid pAH187_45, Plasmid pAH187_3
Bacillus cereus AH820	Chromosome, Plasmid pAH820_3, Plasmid pAH820_272, Plasmid pAH820_10	Chromosome, Plasmid pAH820_3, Plasmid pAH820_272, Plasmid pAH820_10	Chromosome, Plasmid pAH820_3, Plasmid pAH820_272, Plasmid pAH820_10
Bacillus cereus ATCC 10987	Chromosome, Plasmid pBc10987	Chromosome, Plasmid pBc10987	Chromosome, Plasmid pBc10987
Bacillus cereus ATCC 14579	Chromosome, Plasmid pBClin15	Chromosome, Plasmid pBClin15	Chromosome, Plasmid pBClin15
Bacillus cereus B4264	NC_011725	NC_011725	NC_011725
Bacillus cereus E33L	Chromosome, Plasmid pE33L466, Plasmid pE33L5, Plasmid pE33L54, Plasmid pE33L8, Plasmid pE33L9	Chromosome, Plasmid pE33L466, Plasmid pE33L5, Plasmid pE33L54, Plasmid pE33L8, Plasmid pE33L9	Chromosome, Plasmid pE33L466, Plasmid pE33L5, Plasmid pE33L54, Plasmid pE33L8, Plasmid pE33L9
Bacillus cereus G9842	Chromosome, Plasmid pG9842_209, Plasmid pG9842_140	Chromosome, Plasmid pG9842_209, Plasmid pG9842_140	Chromosome, Plasmid pG9842_209, Plasmid pG9842_140
Bacillus cereus Q1	Chromosome, Plasmid pBc239, Plasmid pBc53	Chromosome, Plasmid pBc239, Plasmid pBc53	Chromosome, Plasmid pBc239, Plasmid pBc53
Bacillus clausii KSM-K16	NC_006582	NC_006582	NC_006582
Bacillus cytotoxicus NVH 391-98	Plasmid pBC9801, Chromosome	Plasmid pBC9801, Chromosome	Plasmid pBC9801, Chromosome
Bacillus halodurans C-125	NC_002570	NC_002570	NC_002570
Bacillus licheniformis ATCC 14580	NC_006322	NC_006322	NC_006322
Bacillus licheniformis ATCC 14580	NC_006270	NC_006270	NC_006270
Bacillus pumilus SAFR-032	NC_009848	NC_009848	NC_009848
Bacillus subtilis subsp. subtilis str. 168	NC_000964	NC_000964	NC_000964
Bacillus thuringiensis serovar konkukian str. 97-27	Chromosome, Plasmid pBT9727	Chromosome, Plasmid pBT9727	Chromosome, Plasmid pBT9727
Bacillus thuringiensis str. Al Hakam	Plasmid pALH1, Chromosome	Plasmid pALH1, Chromosome	Plasmid pALH1, Chromosome
Bacillus weihenstephanensis KBAB4	Chromosome, Plasmid pBWB401, Plasmid pBWB402, Plasmid pBWB403, Plasmid pBWB404	Chromosome, Plasmid pBWB401, Plasmid pBWB402, Plasmid pBWB403, Plasmid pBWB404	Chromosome, Plasmid pBWB401, Plasmid pBWB402, Plasmid pBWB403, Plasmid pBWB404
Bacteroides fragilis NCTC 9343	Plasmid pBF9343, Chromosome	Plasmid pBF9343, Chromosome	Plasmid pBF9343, Chromosome
Bacteroides fragilis YCH46	Chromosome, Plasmid pBFY46	Chromosome, Plasmid pBFY46	Chromosome, Plasmid pBFY46
Bacteroides thetaiotaomicron VPI-5482	Chromosome, Plasmid p5482	Chromosome, Plasmid p5482	Chromosome, Plasmid p5482
Bacteroides vulgatus ATCC 8482	NC_009614	NC_009614	NC_009614
Bartonella bacilliformis KC583	NC_008783	NC_008783	NC_008783
Bartonella grahamii as4aup	Plasmid pBGR3, Chromosome	Plasmid pBGR3, Chromosome	Plasmid pBGR3, Chromosome
Bartonella henselae str. Houston-1	NC_005956	NC_005956	NC_005956
Bartonella quintana str. Toulouse	NC_005955	NC_005955	NC_005955
Bartonella tribocorum CIP 105476	Chromosome, PlasmidBtr	Chromosome, PlasmidBtr	Chromosome, PlasmidBtr
Baumannia cicadellinicola str. Hc (Homalodisca coagulata)	NC_007984	NC_007984	NC_007984
Bdellovibrio bacteriovorus HD100	NC_005363	NC_005363	NC_005363
Beijerinckia indica subsp. indica ATCC 9039	Chromosome, Plasmid pBIND01, Plasmid pBIND02	Chromosome, Plasmid pBIND01, Plasmid pBIND02	Chromosome, Plasmid pBIND01, Plasmid pBIND02
Beutenbergia cavernae DSM 12333	NC_012669	NC_012669	NC_012669
Bifidobacterium adolescentis ATCC 15703	NC_008618	NC_008618	NC_008618
Bifidobacterium animalis subsp. lactis AD011	NC_011835	NC_011835	NC_011835
Bifidobacterium animalis subsp. lactis Bl-04	NC_012814	NC_012814	NC_012814
Bifidobacterium animalis subsp. lactis DSM 10140	NC_012815	NC_012815	NC_012815
Bifidobacterium longum DJO10A	Chromosome, Plasmid pDOJH10L, Plasmid pDOJH10S	Chromosome, Plasmid pDOJH10L, Plasmid pDOJH10S	Chromosome, Plasmid pDOJH10L, Plasmid pDOJH10S
Bifidobacterium longum NCC2705	Plasmid pBLO1, Chromosome	Plasmid pBLO1, Chromosome	Plasmid pBLO1, Chromosome
Bifidobacterium longum subsp. infantis ATCC 15697	NC_011593	NC_011593	NC_011593
Bordetella avium 197N	NC_010645	NC_010645	NC_010645
Bordetella bronchiseptica RB50	NC_002927	NC_002927	NC_002927
Bordetella parapertussis 12822	NC_002928	NC_002928	NC_002928
Bordetella pertussis Tohama I	NC_002929	NC_002929	NC_002929
Bordetella petrii DSM 12804	NC_010170	NC_010170	NC_010170
Borrelia afzelii PKo	Chromosome, Plasmid lp60, Plasmid lp60-2, Plasmid lp34, Plasmid lp32, Plasmid cp30, Plasmid lp28, Plasmid cp27, Plasmid lp25	Chromosome, Plasmid lp60, Plasmid lp60-2, Plasmid lp34, Plasmid lp32, Plasmid cp30, Plasmid lp28, Plasmid cp27, Plasmid lp25	Chromosome, Plasmid lp60, Plasmid lp60-2, Plasmid lp34, Plasmid lp32, Plasmid cp30, Plasmid lp28, Plasmid cp27, Plasmid lp25
Borrelia burgdorferi B31	Chromosome, Plasmid cp9, Plasmid cp26, Plasmid cp32-1, Plasmid cp32-3, Plasmid cp32-4, Plasmid cp32-6, Plasmid cp32-7, Plasmid cp32-8, Plasmid cp32-9, Plasmid lp5, Plasmid lp21, Plasmid lp56, Plasmid lp17, Plasmid lp25, Plasmid lp28-1, Plasmid lp28-2, Plasmid lp28-3, Plasmid lp28-4, Plasmid lp36, Plasmid lp38, Plasmid lp54	Chromosome, Plasmid cp9, Plasmid cp26, Plasmid cp32-1, Plasmid cp32-3, Plasmid cp32-4, Plasmid cp32-6, Plasmid cp32-7, Plasmid cp32-8, Plasmid cp32-9, Plasmid lp5, Plasmid lp21, Plasmid lp56, Plasmid lp17, Plasmid lp25, Plasmid lp28-1, Plasmid lp28-2, Plasmid lp28-3, Plasmid lp28-4, Plasmid lp36, Plasmid lp38, Plasmid lp54	Chromosome, Plasmid cp9, Plasmid cp26, Plasmid cp32-1, Plasmid cp32-3, Plasmid cp32-4, Plasmid cp32-6, Plasmid cp32-7, Plasmid cp32-8, Plasmid cp32-9, Plasmid lp5, Plasmid lp21, Plasmid lp56, Plasmid lp17, Plasmid lp25, Plasmid lp28-1, Plasmid lp28-2, Plasmid lp28-3, Plasmid lp28-4, Plasmid lp36, Plasmid lp38, Plasmid lp54
Borrelia burgdorferi ZS7	Plasmid ZS7_lp25, Chromosome, Plasmid ZS7_lp54, Plasmid ZS7_cp32-12, Plasmid ZS7_lp36, Plasmid ZS7_cp32-3+10, Plasmid ZS7_lp28-3, Plasmid ZS7_lp17, Plasmid ZS7_cp32-1, Plasmid ZS7_lp28-4, Plasmid ZS7_cp32-4, Plasmid ZS7_lp28-2, Plasmid ZS7_lp28-1, Plasmid ZS7_cp32-9, Plasmid ZS7_cp26	Plasmid ZS7_lp25, Chromosome, Plasmid ZS7_lp54, Plasmid ZS7_cp32-12, Plasmid ZS7_lp36, Plasmid ZS7_cp32-3+10, Plasmid ZS7_lp28-3, Plasmid ZS7_lp17, Plasmid ZS7_cp32-1, Plasmid ZS7_lp28-4, Plasmid ZS7_cp32-4, Plasmid ZS7_lp28-2, Plasmid ZS7_lp28-1, Plasmid ZS7_cp32-9, Plasmid ZS7_cp26	Plasmid ZS7_lp25, Chromosome, Plasmid ZS7_lp54, Plasmid ZS7_cp32-12, Plasmid ZS7_lp36, Plasmid ZS7_cp32-3+10, Plasmid ZS7_lp28-3, Plasmid ZS7_lp17, Plasmid ZS7_cp32-1, Plasmid ZS7_lp28-4, Plasmid ZS7_cp32-4, Plasmid ZS7_lp28-2, Plasmid ZS7_lp28-1, Plasmid ZS7_cp32-9, Plasmid ZS7_cp26
Borrelia duttonii Ly	Chromosome, Plasmid pl11, Plasmid pl15, Plasmid pl165, Plasmid pl23, Plasmid pl23b, Plasmid pl26, Plasmid pl27, Plasmid pl28, Plasmid pl35, Plasmid pl36, Plasmid pl40, Plasmid pl41, Plasmid pl42, Plasmid pl70, Plasmid pl31, Plasmid pl32	Chromosome, Plasmid pl11, Plasmid pl15, Plasmid pl165, Plasmid pl23, Plasmid pl23b, Plasmid pl26, Plasmid pl27, Plasmid pl28, Plasmid pl35, Plasmid pl36, Plasmid pl40, Plasmid pl41, Plasmid pl42, Plasmid pl70, Plasmid pl31, Plasmid pl32	Chromosome, Plasmid pl11, Plasmid pl15, Plasmid pl165, Plasmid pl23, Plasmid pl23b, Plasmid pl26, Plasmid pl27, Plasmid pl28, Plasmid pl35, Plasmid pl36, Plasmid pl40, Plasmid pl41, Plasmid pl42, Plasmid pl70, Plasmid pl31, Plasmid pl32
Borrelia garinii PBi	Chromosome linear, Plasmid cp26, Plasmid lp54, Plasmid BGARINIPSEUDO	Chromosome linear, Plasmid cp26, Plasmid lp54, Plasmid BGARINIPSEUDO	Chromosome linear, Plasmid cp26, Plasmid lp54, Plasmid BGARINIPSEUDO
Borrelia hermsii DAH	NC_010673	NC_010673	NC_010673
Borrelia recurrentis A1	Chromosome, Plasmid pl124, Plasmid pl23, Plasmid pl33, Plasmid pl35, Plasmid pl37, Plasmid pl53, Plasmid pl6	Chromosome, Plasmid pl124, Plasmid pl23, Plasmid pl33, Plasmid pl35, Plasmid pl37, Plasmid pl53, Plasmid pl6	Chromosome, Plasmid pl124, Plasmid pl23, Plasmid pl33, Plasmid pl35, Plasmid pl37, Plasmid pl53, Plasmid pl6
Borrelia turicatae 91E135	NC_008710	NC_008710	NC_008710
Brachybacterium faecium DSM 4810	NC_013172	NC_013172	NC_013172
Brachyspira hyodysenteriae WA1	Chromosome, Plasmid pBHWA1	Chromosome, Plasmid pBHWA1	Chromosome, Plasmid pBHWA1
Bradyrhizobium japonicum USDA 110	NC_004463	NC_004463	NC_004463
Bradyrhizobium sp. BTAi1	Plasmid pBBta01, Chromosome	Plasmid pBBta01, Chromosome	Plasmid pBBta01, Chromosome
Bradyrhizobium sp. ORS278	NC_009445	NC_009445	NC_009445
Brevibacillus brevis NBRC 100599	NC_012491	NC_012491	NC_012491
Brucella abortus S19	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2
Brucella abortus bv. 1 str. 9-941	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Brucella canis ATCC 23365	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Brucella melitensis 16M	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Brucella melitensis ATCC 23457	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Brucella melitensis biovar Abortus 2308	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Brucella microti CCM 4915	Chromosome 2, Chromosome 1	Chromosome 2, Chromosome 1	Chromosome 2, Chromosome 1
Brucella ovis ATCC 25840	Chromosome II, Chromosome I	Chromosome II, Chromosome I	Chromosome II, Chromosome I
Brucella suis 1330	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Brucella suis ATCC 23445	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Buchnera aphidicola str. 5A (Acyrthosiphon pisum)	NC_011833	NC_011833	NC_011833
Buchnera aphidicola str. APS (Acyrthosiphon pisum)	Chromosome, Plasmid pLeu, Plasmid pTrp	Chromosome, Plasmid pLeu, Plasmid pTrp	Chromosome, Plasmid pLeu, Plasmid pTrp
Buchnera aphidicola str. Bp (Baizongia pistaciae)	Plasmid pBBp1, Chromosome	Plasmid pBBp1, Chromosome	Plasmid pBBp1, Chromosome
Buchnera aphidicola str. Cc (Cinara cedri)	Plasmid pLeu-BCc, Chromosome	Plasmid pLeu-BCc, Chromosome	Plasmid pLeu-BCc, Chromosome
Buchnera aphidicola str. Sg (Schizaphis graminum)	NC_004061	NC_004061	NC_004061
Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)	NC_011834	NC_011834	NC_011834
Burkholderia ambifaria AMMD	Chromosome 1, Chromosome 2, Chromosome 3, Plasmid 1	Chromosome 1, Chromosome 2, Chromosome 3, Plasmid 1	Chromosome 1, Chromosome 2, Chromosome 3, Plasmid 1
Burkholderia ambifaria MC40-6	Chromosome 1, Plasmid pBMC401, Chromosome 2, Chromosome 3	Chromosome 1, Plasmid pBMC401, Chromosome 2, Chromosome 3	Chromosome 1, Plasmid pBMC401, Chromosome 2, Chromosome 3
Burkholderia cenocepacia AU 1054	Chromosome 1, Chromosome 2, Chromosome 3	Chromosome 1, Chromosome 2, Chromosome 3	Chromosome 1, Chromosome 2, Chromosome 3
Burkholderia cenocepacia HI2424	Chromosome 1, Plasmid 1, Chromosome 2, Chromosome 3	Chromosome 1, Plasmid 1, Chromosome 2, Chromosome 3	Chromosome 1, Plasmid 1, Chromosome 2, Chromosome 3
Burkholderia cenocepacia J2315	Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBCJ2315	Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBCJ2315	Chromosome 1, Chromosome 2, Chromosome 3, Plasmid pBCJ2315
Burkholderia cenocepacia MC0-3	Chromosome 1, Chromosome 3, Chromosome 2	Chromosome 1, Chromosome 3, Chromosome 2	Chromosome 1, Chromosome 3, Chromosome 2
Burkholderia glumae BGR1	Chromosome 1, Chromosome 2, Plasmid bglu_1p, Plasmid bglu_2p, Plasmid bglu_3p, Plasmid bglu_4p	Chromosome 1, Chromosome 2, Plasmid bglu_1p, Plasmid bglu_2p, Plasmid bglu_3p, Plasmid bglu_4p	Chromosome 1, Chromosome 2, Plasmid bglu_1p, Plasmid bglu_2p, Plasmid bglu_3p, Plasmid bglu_4p
Burkholderia mallei ATCC 23344	Chromosome 2, Chromosome 1	Chromosome 2, Chromosome 1	Chromosome 2, Chromosome 1
Burkholderia mallei NCTC 10229	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Burkholderia mallei NCTC 10247	Chromosome II, Chromosome I	Chromosome II, Chromosome I	Chromosome II, Chromosome I
Burkholderia mallei SAVP1	Chromosome II, Chromosome I	Chromosome II, Chromosome I	Chromosome II, Chromosome I
Burkholderia multivorans ATCC 17616	Chromosome 3, Plasmid pTGL1, Chromosome 1, Chromosome 2	Chromosome 3, Plasmid pTGL1, Chromosome 1, Chromosome 2	Chromosome 3, Plasmid pTGL1, Chromosome 1, Chromosome 2
Burkholderia multivorans ATCC 17616	Plasmid pBMUL01, Chromosome 2, Chromosome 3, Chromosome 1	Plasmid pBMUL01, Chromosome 2, Chromosome 3, Chromosome 1	Plasmid pBMUL01, Chromosome 2, Chromosome 3, Chromosome 1
Burkholderia phymatum STM815	Chromosome 1, Plasmid pBPHY01, Chromosome 2, Plasmid pBPHY02	Chromosome 1, Plasmid pBPHY01, Chromosome 2, Plasmid pBPHY02	Chromosome 1, Plasmid pBPHY01, Chromosome 2, Plasmid pBPHY02
Burkholderia phytofirmans PsJN	Chromosome 1, Plasmid pBPHYT01, Chromosome 2	Chromosome 1, Plasmid pBPHYT01, Chromosome 2	Chromosome 1, Plasmid pBPHYT01, Chromosome 2
Burkholderia pseudomallei 1106a	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Burkholderia pseudomallei 1710b	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Burkholderia pseudomallei 668	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Burkholderia pseudomallei K96243	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2
Burkholderia sp. 383	Chromosome 3, Chromosome 2, Chromosome 1	Chromosome 3, Chromosome 2, Chromosome 1	Chromosome 3, Chromosome 2, Chromosome 1
Burkholderia thailandensis E264	Chromosome II, Chromosome I	Chromosome II, Chromosome I	Chromosome II, Chromosome I
Burkholderia vietnamiensis G4	Plasmid pBVIE05, Chromosome 3, Plasmid pBVIE02, Chromosome 2, Plasmid pBVIE04, Chromosome 1, Plasmid pBVIE03, Plasmid pBVIE01	Plasmid pBVIE05, Chromosome 3, Plasmid pBVIE02, Chromosome 2, Plasmid pBVIE04, Chromosome 1, Plasmid pBVIE03, Plasmid pBVIE01	Plasmid pBVIE05, Chromosome 3, Plasmid pBVIE02, Chromosome 2, Plasmid pBVIE04, Chromosome 1, Plasmid pBVIE03, Plasmid pBVIE01
Burkholderia xenovorans LB400	Chromosome 2, Chromosome 3, Chromosome 1	Chromosome 2, Chromosome 3, Chromosome 1	Chromosome 2, Chromosome 3, Chromosome 1
Caldicellulosiruptor saccharolyticus DSM 8903	NC_009437	NC_009437	NC_009437
Caldivirga maquilingensis IC-167	NC_009954	NC_009954	NC_009954
Campylobacter concisus 13826	Plasmid pCCON31, Chromosome, Plasmid pCCON16	Plasmid pCCON31, Chromosome, Plasmid pCCON16	Plasmid pCCON31, Chromosome, Plasmid pCCON16
Campylobacter curvus 525.92	NC_009715	NC_009715	NC_009715
Campylobacter fetus subsp. fetus 82-40	NC_008599	NC_008599	NC_008599
Campylobacter hominis ATCC BAA-381	Plasmid pCH4, Chromosome	Plasmid pCH4, Chromosome	Plasmid pCH4, Chromosome
Campylobacter jejuni RM1221	NC_003912	NC_003912	NC_003912
Campylobacter jejuni subsp. doylei 269.97	NC_009707	NC_009707	NC_009707
Campylobacter jejuni subsp. jejuni 81-176	Plasmid pVir, Chromosome, Plasmid pTet	Plasmid pVir, Chromosome, Plasmid pTet	Plasmid pVir, Chromosome, Plasmid pTet
Campylobacter jejuni subsp. jejuni 81116	NC_009839	NC_009839	NC_009839
Campylobacter jejuni subsp. jejuni NCTC 11168	NC_002163	NC_002163	NC_002163
Campylobacter lari RM2100	Chromosome, Megaplasmid pCL2100	Chromosome, Megaplasmid pCL2100	Chromosome, Megaplasmid pCL2100
Candidatus Accumulibacter phosphatis clade IIA str. UW-1	Plasmid pAph03, Chromosome, Plasmid pAph02, Plasmid pAph01	Plasmid pAph03, Chromosome, Plasmid pAph02, Plasmid pAph01	Plasmid pAph03, Chromosome, Plasmid pAph02, Plasmid pAph01
Candidatus Amoebophilus asiaticus 5a2	NC_010830	NC_010830	NC_010830
Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2	Plasmid pCFPG2, Chromosome, Plasmid pCFPG3, Plasmid pCFPG4, Plasmid pCFPG1	Plasmid pCFPG2, Chromosome, Plasmid pCFPG3, Plasmid pCFPG4, Plasmid pCFPG1	Plasmid pCFPG2, Chromosome, Plasmid pCFPG3, Plasmid pCFPG4, Plasmid pCFPG1
Candidatus Blochmannia floridanus	NC_005061	NC_005061	NC_005061
Candidatus Blochmannia pennsylvanicus str. BPEN	NC_007292	NC_007292	NC_007292
Candidatus Carsonella ruddii PV	NC_008512	NC_008512	NC_008512
Candidatus Desulforudis audaxviator MP104C	NC_010424	NC_010424	NC_010424
Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)	Chromosome, Plasmid pHD5AT	Chromosome, Plasmid pHD5AT	Chromosome, Plasmid pHD5AT
Candidatus Hodgkinia cicadicola Dsem	NC_012960	NC_012960	NC_012960
Candidatus Korarchaeum cryptofilum OPF8	NC_010482	NC_010482	NC_010482
Candidatus Koribacter versatilis Ellin345	NC_008009	NC_008009	NC_008009
Candidatus Liberibacter asiaticus str. psy62	NC_012985	NC_012985	NC_012985
Candidatus Methanoregula boonei 6A8	NC_009712	NC_009712	NC_009712
Candidatus Pelagibacter ubique HTCC1062	NC_007205	NC_007205	NC_007205
Candidatus Phytoplasma australiense	NC_010544	NC_010544	NC_010544
Candidatus Phytoplasma mali	NC_011047	NC_011047	NC_011047
Candidatus Protochlamydia amoebophila UWE25	NC_005861	NC_005861	NC_005861
Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	NC_008610	NC_008610	NC_008610
Candidatus Solibacter usitatus Ellin6076	NC_008536	NC_008536	NC_008536
Candidatus Sulcia muelleri GWSS	NC_010118	NC_010118	NC_010118
Candidatus Vesicomyosocius okutanii HA	NC_009465	NC_009465	NC_009465
Candidiatus Sulcia muelleri SMDSEM	NC_013123	NC_013123	NC_013123
Capnocytophaga ochracea DSM 7271	NC_013162	NC_013162	NC_013162
Carboxydothermus hydrogenoformans Z-2901	NC_007503	NC_007503	NC_007503
Catenulispora acidiphila DSM 44928	NC_013131	NC_013131	NC_013131
Caulobacter crescentus CB15	NC_002696	NC_002696	NC_002696
Caulobacter crescentus NA1000	NC_011916	NC_011916	NC_011916
Caulobacter sp. K31	Plasmid pCAUL02, Chromosome, Plasmid pCAUL01	Plasmid pCAUL02, Chromosome, Plasmid pCAUL01	Plasmid pCAUL02, Chromosome, Plasmid pCAUL01
Cellvibrio japonicus Ueda107	NC_010995	NC_010995	NC_010995
Chitinophaga pinensis DSM 2588	NC_013132	NC_013132	NC_013132
Chlamydia muridarum Nigg	Chromosome, Plasmid pMoPn	Chromosome, Plasmid pMoPn	Chromosome, Plasmid pMoPn
Chlamydia trachomatis	NC_012687	NC_012687	NC_012687
Chlamydia trachomatis 434/Bu	NC_010287	NC_010287	NC_010287
Chlamydia trachomatis A/HAR-13	Chromosome, Plasmid pCTA	Chromosome, Plasmid pCTA	Chromosome, Plasmid pCTA
Chlamydia trachomatis D/UW-3/CX	NC_000117	NC_000117	NC_000117
Chlamydia trachomatis Jali20	NC_012686	NC_012686	NC_012686
Chlamydia trachomatis L2b/UCH-1/proctitis	NC_010280	NC_010280	NC_010280
Chlamydophila abortus S26/3	NC_004552	NC_004552	NC_004552
Chlamydophila caviae GPIC	Chromosome, Plasmid pCpGP1	Chromosome, Plasmid pCpGP1	Chromosome, Plasmid pCpGP1
Chlamydophila felis Fe/C-56	Chromosome, Plasmid pCfe1	Chromosome, Plasmid pCfe1	Chromosome, Plasmid pCfe1
Chlamydophila pneumoniae AR39	NC_002179	NC_002179	NC_002179
Chlamydophila pneumoniae CWL029	NC_000922	NC_000922	NC_000922
Chlamydophila pneumoniae J138	NC_002491	NC_002491	NC_002491
Chlamydophila pneumoniae TW-183	NC_005043	NC_005043	NC_005043
Chlorobaculum parvum NCIB 8327	NC_011027	NC_011027	NC_011027
Chlorobium chlorochromatii CaD3	NC_007514	NC_007514	NC_007514
Chlorobium limicola DSM 245	NC_010803	NC_010803	NC_010803
Chlorobium phaeobacteroides BS1	NC_010831	NC_010831	NC_010831
Chlorobium phaeobacteroides DSM 266	NC_008639	NC_008639	NC_008639
Chlorobium phaeovibrioides DSM 265	NC_009337	NC_009337	NC_009337
Chlorobium tepidum TLS	NC_002932	NC_002932	NC_002932
Chloroflexus aggregans DSM 9485	NC_011831	NC_011831	NC_011831
Chloroflexus aurantiacus J-10-fl	NC_010175	NC_010175	NC_010175
Chloroflexus sp. Y-400-fl	NC_012032	NC_012032	NC_012032
Chloroherpeton thalassium ATCC 35110	NC_011026	NC_011026	NC_011026
Chromobacterium violaceum ATCC 12472	NC_005085	NC_005085	NC_005085
Chromohalobacter salexigens DSM 3043	NC_007963	NC_007963	NC_007963
Citrobacter koseri ATCC BAA-895	Chromosome, Plasmid pCKO3, Plasmid pCKO2	Chromosome, Plasmid pCKO3, Plasmid pCKO2	Chromosome, Plasmid pCKO3, Plasmid pCKO2
Clavibacter michiganensis subsp. michiganensis NCPPB 382	Chromosome, Plasmid pCM1, Plasmid pCM2	Chromosome, Plasmid pCM1, Plasmid pCM2	Chromosome, Plasmid pCM1, Plasmid pCM2
Clavibacter michiganensis subsp. sepedonicus	Chromosome, Plasmid pCSL1, Plasmid pCS1	Chromosome, Plasmid pCSL1, Plasmid pCS1	Chromosome, Plasmid pCSL1, Plasmid pCS1
Clostridium acetobutylicum ATCC 824	Chromosome, Plasmid pSOL1	Chromosome, Plasmid pSOL1	Chromosome, Plasmid pSOL1
Clostridium beijerinckii NCIMB 8052	NC_009617	NC_009617	NC_009617
Clostridium botulinum A str. ATCC 19397	NC_009697	NC_009697	NC_009697
Clostridium botulinum A str. ATCC 3502	Plasmid pBOT3502, Chromosome	Plasmid pBOT3502, Chromosome	Plasmid pBOT3502, Chromosome
Clostridium botulinum A str. Hall	NC_009698	NC_009698	NC_009698
Clostridium botulinum A2 str. Kyoto	NC_012563	NC_012563	NC_012563
Clostridium botulinum A3 str. Loch Maree	Chromosome, Plasmid pCLK	Chromosome, Plasmid pCLK	Chromosome, Plasmid pCLK
Clostridium botulinum B str. Eklund 17B	Chromosome, Plasmid pCLL	Chromosome, Plasmid pCLL	Chromosome, Plasmid pCLL
Clostridium botulinum B1 str. Okra	Chromosome, Plasmid pCLD	Chromosome, Plasmid pCLD	Chromosome, Plasmid pCLD
Clostridium botulinum Ba4 str. 657	Plasmid pCLJ, Chromosome, Plasmid pCLJ2	Plasmid pCLJ, Chromosome, Plasmid pCLJ2	Plasmid pCLJ, Chromosome, Plasmid pCLJ2
Clostridium botulinum E3 str. Alaska E43	NC_010723	NC_010723	NC_010723
Clostridium botulinum F str. Langeland	Chromosome, Plasmid pCLI	Chromosome, Plasmid pCLI	Chromosome, Plasmid pCLI
Clostridium cellulolyticum H10	NC_011898	NC_011898	NC_011898
Clostridium difficile 630	Chromosome, Plasmid pCD630	Chromosome, Plasmid pCD630	Chromosome, Plasmid pCD630
Clostridium kluyveri DSM 555	Plasmid pCKL555A, Chromosome	Plasmid pCKL555A, Chromosome	Plasmid pCKL555A, Chromosome
Clostridium kluyveri NBRC 12016	Plasmid pCKL1, Chromosome	Plasmid pCKL1, Chromosome	Plasmid pCKL1, Chromosome
Clostridium novyi NT	NC_008593	NC_008593	NC_008593
Clostridium perfringens ATCC 13124	NC_008261	NC_008261	NC_008261
Clostridium perfringens SM101	Chromosome, Plasmid 1, Plasmid 2	Chromosome, Plasmid 1, Plasmid 2	Chromosome, Plasmid 1, Plasmid 2
Clostridium perfringens str. 13	Chromosome, Plasmid pCP13	Chromosome, Plasmid pCP13	Chromosome, Plasmid pCP13
Clostridium phytofermentans ISDg	NC_010001	NC_010001	NC_010001
Clostridium tetani E88	Chromosome, Plasmid pE88	Chromosome, Plasmid pE88	Chromosome, Plasmid pE88
Clostridium thermocellum ATCC 27405	NC_009012	NC_009012	NC_009012
Colwellia psychrerythraea 34H	NC_003910	NC_003910	NC_003910
Coprothermobacter proteolyticus DSM 5265	NC_011295	NC_011295	NC_011295
Corynebacterium aurimucosum ATCC 700975	Chromosome, Plasmid pET44827	Chromosome, Plasmid pET44827	Chromosome, Plasmid pET44827
Corynebacterium diphtheriae NCTC 13129	NC_002935	NC_002935	NC_002935
Corynebacterium efficiens YS-314	Plasmid pCE3, Plasmid pCE2, Chromosome	Plasmid pCE3, Plasmid pCE2, Chromosome	Plasmid pCE3, Plasmid pCE2, Chromosome
Corynebacterium glutamicum ATCC 13032	NC_003450	NC_003450	NC_003450
Corynebacterium glutamicum ATCC 13032	NC_006958	NC_006958	NC_006958
Corynebacterium glutamicum R	Chromosome, Plasmid pCGR1	Chromosome, Plasmid pCGR1	Chromosome, Plasmid pCGR1
Corynebacterium jeikeium K411	Plasmid pKW4, Chromosome	Plasmid pKW4, Chromosome	Plasmid pKW4, Chromosome
Corynebacterium kroppenstedtii DSM 44385	NC_012704	NC_012704	NC_012704
Corynebacterium urealyticum DSM 7109	NC_010545	NC_010545	NC_010545
Coxiella burnetii CbuG_Q212	NC_011527	NC_011527	NC_011527
Coxiella burnetii CbuK_Q154	Chromosome, Plasmid pQpRS_K_Q154	Chromosome, Plasmid pQpRS_K_Q154	Chromosome, Plasmid pQpRS_K_Q154
Coxiella burnetii Dugway 5J108-111	Chromosome, Plasmid pQpDG	Chromosome, Plasmid pQpDG	Chromosome, Plasmid pQpDG
Coxiella burnetii RSA 331	Plasmid QpH1, Chromosome	Plasmid QpH1, Chromosome	Plasmid QpH1, Chromosome
Coxiella burnetii RSA 493	Chromosome, Plasmid pQpH1	Chromosome, Plasmid pQpH1	Chromosome, Plasmid pQpH1
Cronobacter sakazakii ATCC BAA-894	Chromosome, Plasmid pESA2, Plasmid pESA3	Chromosome, Plasmid pESA2, Plasmid pESA3	Chromosome, Plasmid pESA2, Plasmid pESA3
Cryptobacterium curtum DSM 15641	NC_013170	NC_013170	NC_013170
Cupriavidus taiwanensis	Chromosome 1, Chromosome 2, Plasmid pRALTA	Chromosome 1, Chromosome 2, Plasmid pRALTA	Chromosome 1, Chromosome 2, Plasmid pRALTA
Cyanothece sp. ATCC 51142	Chromosome circular, Plasmid A, Chromosome linear, Plasmid B, Plasmid C, Plasmid D	Chromosome circular, Plasmid A, Chromosome linear, Plasmid B, Plasmid C, Plasmid D	Chromosome circular, Plasmid A, Chromosome linear, Plasmid B, Plasmid C, Plasmid D
Cyanothece sp. PCC 7424	Chromosome, Plasmid pP742401, Plasmid pP742402, Plasmid pP742403, Plasmid pP742404, Plasmid pP742405, Plasmid pP742406	Chromosome, Plasmid pP742401, Plasmid pP742402, Plasmid pP742403, Plasmid pP742404, Plasmid pP742405, Plasmid pP742406	Chromosome, Plasmid pP742401, Plasmid pP742402, Plasmid pP742403, Plasmid pP742404, Plasmid pP742405, Plasmid pP742406
Cyanothece sp. PCC 7425	Chromosome, Plasmid pP742501, Plasmid pP742502, Plasmid pP742503	Chromosome, Plasmid pP742501, Plasmid pP742502, Plasmid pP742503	Chromosome, Plasmid pP742501, Plasmid pP742502, Plasmid pP742503
Cyanothece sp. PCC 8801	Chromosome, Plasmid pP880101, Plasmid pP880102, Plasmid pP880103	Chromosome, Plasmid pP880101, Plasmid pP880102, Plasmid pP880103	Chromosome, Plasmid pP880101, Plasmid pP880102, Plasmid pP880103
Cyanothece sp. PCC 8802	Chromosome, Plasmid pP880201, Plasmid pP880203, Plasmid pP880204, Plasmid pP880202	Chromosome, Plasmid pP880201, Plasmid pP880203, Plasmid pP880204, Plasmid pP880202	Chromosome, Plasmid pP880201, Plasmid pP880203, Plasmid pP880204, Plasmid pP880202
Cytophaga hutchinsonii ATCC 33406	NC_008255	NC_008255	NC_008255
Dechloromonas aromatica RCB	NC_007298	NC_007298	NC_007298
Dehalococcoides ethenogenes 195	NC_002936	NC_002936	NC_002936
Dehalococcoides sp. BAV1	NC_009455	NC_009455	NC_009455
Dehalococcoides sp. CBDB1	NC_007356	NC_007356	NC_007356
Deinococcus deserti VCD115	Chromosome, Plasmid 1, Plasmid 2, Plasmid 3	Chromosome, Plasmid 1, Plasmid 2, Plasmid 3	Chromosome, Plasmid 1, Plasmid 2, Plasmid 3
Deinococcus geothermalis DSM 11300	Plasmid 1, Chromosome, Plasmid pDGEO02	Plasmid 1, Chromosome, Plasmid pDGEO02	Plasmid 1, Chromosome, Plasmid pDGEO02
Deinococcus radiodurans R1	Chromosome 1, Chromosome 2, Plasmid MP1, Plasmid CP1	Chromosome 1, Chromosome 2, Plasmid MP1, Plasmid CP1	Chromosome 1, Chromosome 2, Plasmid MP1, Plasmid CP1
Delftia acidovorans SPH-1	NC_010002	NC_010002	NC_010002
Desulfatibacillum alkenivorans AK-01	NC_011768	NC_011768	NC_011768
Desulfitobacterium hafniense DCB-2	NC_011830	NC_011830	NC_011830
Desulfitobacterium hafniense Y51	NC_007907	NC_007907	NC_007907
Desulfobacterium autotrophicum HRM2	Chromosome, Plasmid pHRM2a	Chromosome, Plasmid pHRM2a	Chromosome, Plasmid pHRM2a
Desulfococcus oleovorans Hxd3	NC_009943	NC_009943	NC_009943
Desulfomicrobium baculatum DSM 4028	NC_013173	NC_013173	NC_013173
Desulfotalea psychrophila LSv54	Chromosome, Plasmid large, Plasmid small	Chromosome, Plasmid large, Plasmid small	Chromosome, Plasmid large, Plasmid small
Desulfotomaculum reducens MI-1	NC_009253	NC_009253	NC_009253
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	NC_011883	NC_011883	NC_011883
Desulfovibrio desulfuricans subsp. desulfuricans str. G20	NC_007519	NC_007519	NC_007519
Desulfovibrio magneticus RS-1	Plasmid pDMC2, Chromosome, Plasmid pDMC1	Plasmid pDMC2, Chromosome, Plasmid pDMC1	Plasmid pDMC2, Chromosome, Plasmid pDMC1
Desulfovibrio salexigens DSM 2638	NC_012881	NC_012881	NC_012881
Desulfovibrio vulgaris DP4	Plasmid pDVUL01, Chromosome	Plasmid pDVUL01, Chromosome	Plasmid pDVUL01, Chromosome
Desulfovibrio vulgaris str. 'Miyazaki F'	NC_011769	NC_011769	NC_011769
Desulfovibrio vulgaris str. Hildenborough	Chromosome, Megaplasmid	Chromosome, Megaplasmid	Chromosome, Megaplasmid
Desulfurococcus kamchatkensis 1221n	NC_011766	NC_011766	NC_011766
Diaphorobacter sp. TPSY	NC_011992	NC_011992	NC_011992
Dichelobacter nodosus VCS1703A	NC_009446	NC_009446	NC_009446
Dickeya dadantii Ech703	NC_012880	NC_012880	NC_012880
Dickeya zeae Ech1591	NC_012912	NC_012912	NC_012912
Dictyoglomus thermophilum H-6-12	NC_011297	NC_011297	NC_011297
Dictyoglomus turgidum DSM 6724	NC_011661	NC_011661	NC_011661
Dinoroseobacter shibae DFL 12	Chromosome, Plasmid pDSHI01, Plasmid pDSHI02, Plasmid pDSHI03, Plasmid pDSHI04, Plasmid pDSHI05	Chromosome, Plasmid pDSHI01, Plasmid pDSHI02, Plasmid pDSHI03, Plasmid pDSHI04, Plasmid pDSHI05	Chromosome, Plasmid pDSHI01, Plasmid pDSHI02, Plasmid pDSHI03, Plasmid pDSHI04, Plasmid pDSHI05
Dyadobacter fermentans DSM 18053	NC_013037	NC_013037	NC_013037
Edwardsiella ictaluri 93-146	NC_012779	NC_012779	NC_012779
Ehrlichia canis str. Jake	NC_007354	NC_007354	NC_007354
Ehrlichia chaffeensis str. Arkansas	NC_007799	NC_007799	NC_007799
Ehrlichia ruminantium str. Gardel	NC_006831	NC_006831	NC_006831
Ehrlichia ruminantium str. Welgevonden	NC_006832	NC_006832	NC_006832
Ehrlichia ruminantium str. Welgevonden	NC_005295	NC_005295	NC_005295
Elusimicrobium minutum Pei191	NC_010644	NC_010644	NC_010644
Enterobacter sp. 638	Plasmid pENTE01, Chromosome	Plasmid pENTE01, Chromosome	Plasmid pENTE01, Chromosome
Enterococcus faecalis V583	Chromosome, Plasmid pTEF1, Plasmid pTEF2, Plasmid pTEF3	Chromosome, Plasmid pTEF1, Plasmid pTEF2, Plasmid pTEF3	Chromosome, Plasmid pTEF1, Plasmid pTEF2, Plasmid pTEF3
Erwinia tasmaniensis Et1/99	Chromosome, Plasmid pET46, Plasmid pET09, Plasmid pET35, Plasmid pET49, Plasmid pET45	Chromosome, Plasmid pET46, Plasmid pET09, Plasmid pET35, Plasmid pET49, Plasmid pET45	Chromosome, Plasmid pET46, Plasmid pET09, Plasmid pET35, Plasmid pET49, Plasmid pET45
Erythrobacter litoralis HTCC2594	NC_007722	NC_007722	NC_007722
Escherichia coli 536	NC_008253	NC_008253	NC_008253
Escherichia coli 55989	NC_011748	NC_011748	NC_011748
Escherichia coli APEC O1	Chromosome, Plasmid pAPEC-O1-R, Plasmid pAPEC-O1-ColBM	Chromosome, Plasmid pAPEC-O1-R, Plasmid pAPEC-O1-ColBM	Chromosome, Plasmid pAPEC-O1-R, Plasmid pAPEC-O1-ColBM
Escherichia coli ATCC 8739	NC_010468	NC_010468	NC_010468
Escherichia coli B str. REL606	NC_012967	NC_012967	NC_012967
Escherichia coli BL21	NC_012892	NC_012892	NC_012892
Escherichia coli BL21(DE3)	NC_012947	NC_012947	NC_012947
Escherichia coli BL21(DE3)	NC_012971	NC_012971	NC_012971
Escherichia coli BW2952	NC_012759	NC_012759	NC_012759
Escherichia coli CFT073	NC_004431	NC_004431	NC_004431
Escherichia coli E24377A	Plasmid pETEC_80, Chromosome, Plasmid pETEC_35, Plasmid pETEC_73, Plasmid pETEC_6, Plasmid pETEC_74, Plasmid pETEC_5	Plasmid pETEC_80, Chromosome, Plasmid pETEC_35, Plasmid pETEC_73, Plasmid pETEC_6, Plasmid pETEC_74, Plasmid pETEC_5	Plasmid pETEC_80, Chromosome, Plasmid pETEC_35, Plasmid pETEC_73, Plasmid pETEC_6, Plasmid pETEC_74, Plasmid pETEC_5
Escherichia coli ED1a	NC_011745	NC_011745	NC_011745
Escherichia coli HS	NC_009800	NC_009800	NC_009800
Escherichia coli IAI1	NC_011741	NC_011741	NC_011741
Escherichia coli IAI39	NC_011750	NC_011750	NC_011750
Escherichia coli O127:H6 str. E2348/69	Plasmid pE2348-2, Chromosome, Plasmid pMAR2	Plasmid pE2348-2, Chromosome, Plasmid pMAR2	Plasmid pE2348-2, Chromosome, Plasmid pMAR2
Escherichia coli O157:H7 EDL933	Plasmid pO157, Chromosome	Plasmid pO157, Chromosome	Plasmid pO157, Chromosome
Escherichia coli O157:H7 str. EC4115	Plasmid pO157, Chromosome, Plasmid pEC4115	Plasmid pO157, Chromosome, Plasmid pEC4115	Plasmid pO157, Chromosome, Plasmid pEC4115
Escherichia coli O157:H7 str. Sakai	Chromosome, Plasmid pO157, Plasmid pOSAK1	Chromosome, Plasmid pO157, Plasmid pOSAK1	Chromosome, Plasmid pO157, Plasmid pOSAK1
Escherichia coli O157:H7 str. TW14359	Plasmid pO157, Chromosome	Plasmid pO157, Chromosome	Plasmid pO157, Chromosome
Escherichia coli S88	Chromosome, Plasmid pECOS88	Chromosome, Plasmid pECOS88	Chromosome, Plasmid pECOS88
Escherichia coli SE11	Plasmid pSE11-4, Chromosome, Plasmid pSE11-5, Plasmid pSE11-6, Plasmid pSE11-2, Plasmid pSE11-3, Plasmid pSE11-1	Plasmid pSE11-4, Chromosome, Plasmid pSE11-5, Plasmid pSE11-6, Plasmid pSE11-2, Plasmid pSE11-3, Plasmid pSE11-1	Plasmid pSE11-4, Chromosome, Plasmid pSE11-5, Plasmid pSE11-6, Plasmid pSE11-2, Plasmid pSE11-3, Plasmid pSE11-1
Escherichia coli SMS-3-5	Plasmid pSMS35_8, Chromosome, Plasmid pSMS35_4, Plasmid pSMS35_3, Plasmid pSMS35_130	Plasmid pSMS35_8, Chromosome, Plasmid pSMS35_4, Plasmid pSMS35_3, Plasmid pSMS35_130	Plasmid pSMS35_8, Chromosome, Plasmid pSMS35_4, Plasmid pSMS35_3, Plasmid pSMS35_130
Escherichia coli UMN026	Chromosome, Plasmid p1ESCUM, Plasmid p2ESCUM	Chromosome, Plasmid p1ESCUM, Plasmid p2ESCUM	Chromosome, Plasmid p1ESCUM, Plasmid p2ESCUM
Escherichia coli UTI89	Chromosome, Plasmid pUTI89	Chromosome, Plasmid pUTI89	Chromosome, Plasmid pUTI89
Escherichia coli str. K-12 substr. DH10B	NC_010473	NC_010473	NC_010473
Escherichia coli str. K-12 substr. MG1655	NC_000913	NC_000913	NC_000913
Escherichia coli str. K-12 substr. W3110	AC_000091	AC_000091	AC_000091
Escherichia fergusonii ATCC 35469	Chromosome, Plasmid pEFER	Chromosome, Plasmid pEFER	Chromosome, Plasmid pEFER
Eubacterium eligens ATCC 27750	Chromosome, Plasmid unnamed, Plasmid unnamed	Chromosome, Plasmid unnamed, Plasmid unnamed	Chromosome, Plasmid unnamed, Plasmid unnamed
Eubacterium rectale ATCC 33656	NC_012781	NC_012781	NC_012781
Exiguobacterium sibiricum 255-15	Chromosome, Plasmid pEXIG01, Plasmid pEXIG02	Chromosome, Plasmid pEXIG01, Plasmid pEXIG02	Chromosome, Plasmid pEXIG01, Plasmid pEXIG02
Exiguobacterium sp. AT1b	NC_012673	NC_012673	NC_012673
Fervidobacterium nodosum Rt17-B1	NC_009718	NC_009718	NC_009718
Finegoldia magna ATCC 29328	Plasmid pFMC, Chromosome	Plasmid pFMC, Chromosome	Plasmid pFMC, Chromosome
Flavobacteriaceae bacterium 3519-10	NC_013062	NC_013062	NC_013062
Flavobacterium johnsoniae UW101	NC_009441	NC_009441	NC_009441
Flavobacterium psychrophilum JIP02/86	NC_009613	NC_009613	NC_009613
Francisella novicida U112	NC_008601	NC_008601	NC_008601
Francisella philomiragia subsp. philomiragia ATCC 25017	Plasmid pFPHI01, Chromosome	Plasmid pFPHI01, Chromosome	Plasmid pFPHI01, Chromosome
Francisella tularensis subsp. holarctica	NC_007880	NC_007880	NC_007880
Francisella tularensis subsp. holarctica FTNF002-00	NC_009749	NC_009749	NC_009749
Francisella tularensis subsp. holarctica OSU18	NC_008369	NC_008369	NC_008369
Francisella tularensis subsp. mediasiatica FSC147	NC_010677	NC_010677	NC_010677
Francisella tularensis subsp. tularensis FSC198	NC_008245	NC_008245	NC_008245
Francisella tularensis subsp. tularensis SCHU S4	NC_006570	NC_006570	NC_006570
Francisella tularensis subsp. tularensis WY96-3418	NC_009257	NC_009257	NC_009257
Frankia alni ACN14a	NC_008278	NC_008278	NC_008278
Frankia sp. CcI3	NC_007777	NC_007777	NC_007777
Frankia sp. EAN1pec	NC_009921	NC_009921	NC_009921
Fusobacterium nucleatum subsp. nucleatum ATCC 25586	NC_003454	NC_003454	NC_003454
Gemmatimonas aurantiaca T-27	NC_012489	NC_012489	NC_012489
Geobacillus kaustophilus HTA426	Chromosome, Plasmid pHTA426	Chromosome, Plasmid pHTA426	Chromosome, Plasmid pHTA426
Geobacillus sp. WCH70	Chromosome, Plasmid pWCH7001, Plasmid pWCH7002	Chromosome, Plasmid pWCH7001, Plasmid pWCH7002	Chromosome, Plasmid pWCH7001, Plasmid pWCH7002
Geobacillus thermodenitrificans NG80-2	Chromosome, Plasmid pLW1071	Chromosome, Plasmid pLW1071	Chromosome, Plasmid pLW1071
Geobacter bemidjiensis Bem	NC_011146	NC_011146	NC_011146
Geobacter lovleyi SZ	Chromosome, Plasmid pGLOV01	Chromosome, Plasmid pGLOV01	Chromosome, Plasmid pGLOV01
Geobacter metallireducens GS-15	Plasmid unnamed, Chromosome	Plasmid unnamed, Chromosome	Plasmid unnamed, Chromosome
Geobacter sp. FRC-32	NC_011979	NC_011979	NC_011979
Geobacter sp. M21	NC_012918	NC_012918	NC_012918
Geobacter sulfurreducens PCA	NC_002939	NC_002939	NC_002939
Geobacter uraniireducens Rf4	NC_009483	NC_009483	NC_009483
Gloeobacter violaceus PCC 7421	NC_005125	NC_005125	NC_005125
Gluconacetobacter diazotrophicus PAl 5	Chromosome, Plasmid pGDIA01	Chromosome, Plasmid pGDIA01	Chromosome, Plasmid pGDIA01
Gluconacetobacter diazotrophicus PAl 5	Chromosome, Plasmid pGDIPal5II, Plasmid pGDIPal5I	Chromosome, Plasmid pGDIPal5II, Plasmid pGDIPal5I	Chromosome, Plasmid pGDIPal5II, Plasmid pGDIPal5I
Gluconobacter oxydans 621H	Chromosome, Plasmid pGOX1, Plasmid pGOX2, Plasmid pGOX3, Plasmid pGOX4, Plasmid pGOX5	Chromosome, Plasmid pGOX1, Plasmid pGOX2, Plasmid pGOX3, Plasmid pGOX4, Plasmid pGOX5	Chromosome, Plasmid pGOX1, Plasmid pGOX2, Plasmid pGOX3, Plasmid pGOX4, Plasmid pGOX5
Gramella forsetii KT0803	NC_008571	NC_008571	NC_008571
Granulibacter bethesdensis CGDNIH1	NC_008343	NC_008343	NC_008343
Haemophilus ducreyi 35000HP	NC_002940	NC_002940	NC_002940
Haemophilus influenzae 86-028NP	NC_007146	NC_007146	NC_007146
Haemophilus influenzae PittEE	NC_009566	NC_009566	NC_009566
Haemophilus influenzae PittGG	NC_009567	NC_009567	NC_009567
Haemophilus influenzae Rd KW20	NC_000907	NC_000907	NC_000907
Haemophilus parasuis SH0165	NC_011852	NC_011852	NC_011852
Haemophilus somnus 129PT	Chromosome, Plasmid pHS129	Chromosome, Plasmid pHS129	Chromosome, Plasmid pHS129
Haemophilus somnus 2336	NC_010519	NC_010519	NC_010519
Hahella chejuensis KCTC 2396	NC_007645	NC_007645	NC_007645
Haloarcula marismortui ATCC 43049	Chromosome I, Chromosome II, Plasmid pNG100, Plasmid pNG200, Plasmid pNG300, Plasmid pNG400, Plasmid pNG500, Plasmid pNG600, Plasmid pNG700	Chromosome I, Chromosome II, Plasmid pNG100, Plasmid pNG200, Plasmid pNG300, Plasmid pNG400, Plasmid pNG500, Plasmid pNG600, Plasmid pNG700	Chromosome I, Chromosome II, Plasmid pNG100, Plasmid pNG200, Plasmid pNG300, Plasmid pNG400, Plasmid pNG500, Plasmid pNG600, Plasmid pNG700
Halobacterium salinarum R1	Chromosome, Plasmid PHS1, Plasmid PHS2, Plasmid PHS3, Plasmid PHS4	Chromosome, Plasmid PHS1, Plasmid PHS2, Plasmid PHS3, Plasmid PHS4	Chromosome, Plasmid PHS1, Plasmid PHS2, Plasmid PHS3, Plasmid PHS4
Halobacterium sp. NRC-1	Chromosome, Plasmid pNRC200, Plasmid pNRC100	Chromosome, Plasmid pNRC200, Plasmid pNRC100	Chromosome, Plasmid pNRC200, Plasmid pNRC100
Haloquadratum walsbyi DSM 16790	Chromosome, Plasmid PL47	Chromosome, Plasmid PL47	Chromosome, Plasmid PL47
Halorhabdus utahensis DSM 12940	NC_013158	NC_013158	NC_013158
Halorhodospira halophila SL1	NC_008789	NC_008789	NC_008789
Halorubrum lacusprofundi ATCC 49239	Chromosome 1, Plasmid pHLAC01, Chromosome 2	Chromosome 1, Plasmid pHLAC01, Chromosome 2	Chromosome 1, Plasmid pHLAC01, Chromosome 2
Halothermothrix orenii H 168	NC_011899	NC_011899	NC_011899
Helicobacter acinonychis str. Sheeba	Chromosome, Plasmid pHac1	Chromosome, Plasmid pHac1	Chromosome, Plasmid pHac1
Helicobacter hepaticus ATCC 51449	NC_004917	NC_004917	NC_004917
Helicobacter pylori 26695	NC_000915	NC_000915	NC_000915
Helicobacter pylori B38	NC_012973	NC_012973	NC_012973
Helicobacter pylori G27	Chromosome, Plasmid pHPG27	Chromosome, Plasmid pHPG27	Chromosome, Plasmid pHPG27
Helicobacter pylori HPAG1	Chromosome, Plasmid pHPAG1	Chromosome, Plasmid pHPAG1	Chromosome, Plasmid pHPAG1
Helicobacter pylori J99	NC_000921	NC_000921	NC_000921
Helicobacter pylori P12	Chromosome, Plasmid HPP12	Chromosome, Plasmid HPP12	Chromosome, Plasmid HPP12
Helicobacter pylori Shi470	NC_010698	NC_010698	NC_010698
Heliobacterium modesticaldum Ice1	NC_010337	NC_010337	NC_010337
Herminiimonas arsenicoxydans	NC_009138	NC_009138	NC_009138
Herpetosiphon aurantiacus ATCC 23779	Chromosome, Plasmid pHAU01, Plasmid pHAU02	Chromosome, Plasmid pHAU01, Plasmid pHAU02	Chromosome, Plasmid pHAU01, Plasmid pHAU02
Hirschia baltica ATCC 49814	Plasmid pHbal01, Chromosome	Plasmid pHbal01, Chromosome	Plasmid pHbal01, Chromosome
Hydrogenobaculum sp. Y04AAS1	NC_011126	NC_011126	NC_011126
Hyperthermus butylicus DSM 5456	NC_008818	NC_008818	NC_008818
Hyphomonas neptunium ATCC 15444	NC_008358	NC_008358	NC_008358
Idiomarina loihiensis L2TR	NC_006512	NC_006512	NC_006512
Ignicoccus hospitalis KIN4/I	NC_009776	NC_009776	NC_009776
Jannaschia sp. CCS1	Chromosome, Plasmid1	Chromosome, Plasmid1	Chromosome, Plasmid1
Janthinobacterium sp. Marseille	NC_009659	NC_009659	NC_009659
Jonesia denitrificans DSM 20603	NC_013174	NC_013174	NC_013174
Kangiella koreensis DSM 16069	NC_013166	NC_013166	NC_013166
Kineococcus radiotolerans SRS30216	Chromosome, Plasmid pKRAD01, Plasmid pKRAD02	Chromosome, Plasmid pKRAD01, Plasmid pKRAD02	Chromosome, Plasmid pKRAD01, Plasmid pKRAD02
Klebsiella pneumoniae 342	Chromosome, Plasmid pKP187, Plasmid pKP91	Chromosome, Plasmid pKP187, Plasmid pKP91	Chromosome, Plasmid pKP187, Plasmid pKP91
Klebsiella pneumoniae NTUH-K2044	NC_012731	NC_012731	NC_012731
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Chromosome, Plasmid pKPN3, Plasmid pKPN4, Plasmid pKPN5, Plasmid pKPN6, Plasmid pKPN7	Chromosome, Plasmid pKPN3, Plasmid pKPN4, Plasmid pKPN5, Plasmid pKPN6, Plasmid pKPN7	Chromosome, Plasmid pKPN3, Plasmid pKPN4, Plasmid pKPN5, Plasmid pKPN6, Plasmid pKPN7
Kocuria rhizophila DC2201	NC_010617	NC_010617	NC_010617
Kosmotoga olearia TBF 19.5.1	NC_012785	NC_012785	NC_012785
Kytococcus sedentarius DSM 20547	NC_013169	NC_013169	NC_013169
Lactobacillus acidophilus NCFM	NC_006814	NC_006814	NC_006814
Lactobacillus brevis ATCC 367	Chromosome, Plasmid 1, Plasmid 2	Chromosome, Plasmid 1, Plasmid 2	Chromosome, Plasmid 1, Plasmid 2
Lactobacillus casei ATCC 334	Plasmid 1, Chromosome	Plasmid 1, Chromosome	Plasmid 1, Chromosome
Lactobacillus casei BL23	NC_010999	NC_010999	NC_010999
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	NC_008054	NC_008054	NC_008054
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	NC_008529	NC_008529	NC_008529
Lactobacillus fermentum IFO 3956	NC_010610	NC_010610	NC_010610
Lactobacillus gasseri ATCC 33323	NC_008530	NC_008530	NC_008530
Lactobacillus helveticus DPC 4571	NC_010080	NC_010080	NC_010080
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum JDM1	NC_012984	NC_012984	NC_012984
Lactobacillus plantarum WCFS1	Chromosome, Plasmid pWCFS101, Plasmid pWCFS102, Plasmid pWCFS103	Chromosome, Plasmid pWCFS101, Plasmid pWCFS102, Plasmid pWCFS103	Chromosome, Plasmid pWCFS101, Plasmid pWCFS102, Plasmid pWCFS103
Lactobacillus reuteri DSM 20016	NC_009513	NC_009513	NC_009513
Lactobacillus reuteri JCM 1112	NC_010609	NC_010609	NC_010609
Lactobacillus sakei subsp. sakei 23K	NC_007576	NC_007576	NC_007576
Lactobacillus salivarius UCC118	Chromosome, Plasmid pSF118-20, Plasmid pSF118-44, Plasmid pMP118	Chromosome, Plasmid pSF118-20, Plasmid pSF118-44, Plasmid pMP118	Chromosome, Plasmid pSF118-20, Plasmid pSF118-44, Plasmid pMP118
Lactococcus lactis subsp. cremoris MG1363	NC_009004	NC_009004	NC_009004
Lactococcus lactis subsp. cremoris SK11	Plasmid 1, Chromosome, Plasmid 2, Plasmid 3, Plasmid 4, Plasmid 5	Plasmid 1, Chromosome, Plasmid 2, Plasmid 3, Plasmid 4, Plasmid 5	Plasmid 1, Chromosome, Plasmid 2, Plasmid 3, Plasmid 4, Plasmid 5
Lactococcus lactis subsp. lactis Il1403	NC_002662	NC_002662	NC_002662
Laribacter hongkongensis HLHK9	NC_012559	NC_012559	NC_012559
Lawsonia intracellularis PHE/MN1-00	Chromosome, Plasmid 1, Plasmid 2, Plasmid 3	Chromosome, Plasmid 1, Plasmid 2, Plasmid 3	Chromosome, Plasmid 1, Plasmid 2, Plasmid 3
Legionella pneumophila str. Corby	NC_009494	NC_009494	NC_009494
Legionella pneumophila str. Lens	Chromosome, Plasmid pLPL	Chromosome, Plasmid pLPL	Chromosome, Plasmid pLPL
Legionella pneumophila str. Paris	Chromosome, Plasmid pLPP	Chromosome, Plasmid pLPP	Chromosome, Plasmid pLPP
Legionella pneumophila subsp. pneumophila str. Philadelphia 1	NC_002942	NC_002942	NC_002942
Leifsonia xyli subsp. xyli str. CTCB07	NC_006087	NC_006087	NC_006087
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'	Chromosome I, Plasmid p74, Chromosome II	Chromosome I, Plasmid p74, Chromosome II	Chromosome I, Plasmid p74, Chromosome II
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'	Plasmid p74, Chromosome I, Chromosome II	Plasmid p74, Chromosome I, Chromosome II	Plasmid p74, Chromosome I, Chromosome II
Leptospira borgpetersenii serovar Hardjo-bovis JB197	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2
Leptospira borgpetersenii serovar Hardjo-bovis L550	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Leptospira interrogans serovar Lai str. 56601	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Leptothrix cholodnii SP-6	NC_010524	NC_010524	NC_010524
Leptotrichia buccalis DSM 1135	NC_013192	NC_013192	NC_013192
Leuconostoc citreum KM20	Plasmid pLCK2, Chromosome, Plasmid pLCK3, Plasmid pLCK4, Plasmid pLCK1	Plasmid pLCK2, Chromosome, Plasmid pLCK3, Plasmid pLCK4, Plasmid pLCK1	Plasmid pLCK2, Chromosome, Plasmid pLCK3, Plasmid pLCK4, Plasmid pLCK1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Plasmid pLEUM1, Chromosome	Plasmid pLEUM1, Chromosome	Plasmid pLEUM1, Chromosome
Listeria innocua Clip11262	Chromosome, Plasmid pLI100	Chromosome, Plasmid pLI100	Chromosome, Plasmid pLI100
Listeria monocytogenes Clip80459	NC_012488	NC_012488	NC_012488
Listeria monocytogenes EGD-e	NC_003210	NC_003210	NC_003210
Listeria monocytogenes HCC23	NC_011660	NC_011660	NC_011660
Listeria monocytogenes str. 4b F2365	NC_002973	NC_002973	NC_002973
Listeria welshimeri serovar 6b str. SLCC5334	NC_008555	NC_008555	NC_008555
Lysinibacillus sphaericus C3-41	Plasmid pBsph, Chromosome	Plasmid pBsph, Chromosome	Plasmid pBsph, Chromosome
Macrococcus caseolyticus JCSC5402	Chromosome, Plasmid pMCCL2, Plasmid pMCCL1, Plasmid pMCCL3, Plasmid pMCCL4, Plasmid pMCCL5, Plasmid pMCCL6, Plasmid pMCCL7, Plasmid pMCCL8	Chromosome, Plasmid pMCCL2, Plasmid pMCCL1, Plasmid pMCCL3, Plasmid pMCCL4, Plasmid pMCCL5, Plasmid pMCCL6, Plasmid pMCCL7, Plasmid pMCCL8	Chromosome, Plasmid pMCCL2, Plasmid pMCCL1, Plasmid pMCCL3, Plasmid pMCCL4, Plasmid pMCCL5, Plasmid pMCCL6, Plasmid pMCCL7, Plasmid pMCCL8
Magnetococcus sp. MC-1	NC_008576	NC_008576	NC_008576
Magnetospirillum magneticum AMB-1	NC_007626	NC_007626	NC_007626
Mannheimia succiniciproducens MBEL55E	NC_006300	NC_006300	NC_006300
Maricaulis maris MCS10	NC_008347	NC_008347	NC_008347
Marinobacter aquaeolei VT8	Plasmid pMAQU01, Chromosome, Plasmid pMAQU02	Plasmid pMAQU01, Chromosome, Plasmid pMAQU02	Plasmid pMAQU01, Chromosome, Plasmid pMAQU02
Marinomonas sp. MWYL1	NC_009654	NC_009654	NC_009654
Mesoplasma florum L1	NC_006055	NC_006055	NC_006055
Mesorhizobium loti MAFF303099	Chromosome, Plasmid pMLa, Plasmid pMLb	Chromosome, Plasmid pMLa, Plasmid pMLb	Chromosome, Plasmid pMLa, Plasmid pMLb
Mesorhizobium sp. BNC1	Chromosome, Plasmid 1, Plasmid 2, Plasmid 3	Chromosome, Plasmid 1, Plasmid 2, Plasmid 3	Chromosome, Plasmid 1, Plasmid 2, Plasmid 3
Metallosphaera sedula DSM 5348	NC_009440	NC_009440	NC_009440
Methanobrevibacter smithii ATCC 35061	NC_009515	NC_009515	NC_009515
Methanocaldococcus fervens AG86	Chromosome, Plasmid pMEFER01	Chromosome, Plasmid pMEFER01	Chromosome, Plasmid pMEFER01
Methanocaldococcus jannaschii DSM 2661	Chromosome, Chromosome extra-chr1, Extrachrom extra-chr2	Chromosome, Chromosome extra-chr1, Extrachrom extra-chr2	Chromosome, Chromosome extra-chr1, Extrachrom extra-chr2
Methanococcoides burtonii DSM 6242	NC_007955	NC_007955	NC_007955
Methanococcus aeolicus Nankai-3	NC_009635	NC_009635	NC_009635
Methanococcus maripaludis C5	Chromosome, Plasmid pMMC501	Chromosome, Plasmid pMMC501	Chromosome, Plasmid pMMC501
Methanococcus maripaludis C6	NC_009975	NC_009975	NC_009975
Methanococcus maripaludis C7	NC_009637	NC_009637	NC_009637
Methanococcus maripaludis S2	NC_005791	NC_005791	NC_005791
Methanococcus vannielii SB	NC_009634	NC_009634	NC_009634
Methanocorpusculum labreanum Z	NC_008942	NC_008942	NC_008942
Methanoculleus marisnigri JR1	NC_009051	NC_009051	NC_009051
Methanopyrus kandleri AV19	NC_003551	NC_003551	NC_003551
Methanosaeta thermophila PT	NC_008553	NC_008553	NC_008553
Methanosarcina acetivorans C2A	NC_003552	NC_003552	NC_003552
Methanosarcina barkeri str. Fusaro	Plasmid 1, Chromosome 1	Plasmid 1, Chromosome 1	Plasmid 1, Chromosome 1
Methanosarcina mazei Go1	NC_003901	NC_003901	NC_003901
Methanosphaera stadtmanae DSM 3091	NC_007681	NC_007681	NC_007681
Methanosphaerula palustris E1-9c	NC_011832	NC_011832	NC_011832
Methanospirillum hungatei JF-1	NC_007796	NC_007796	NC_007796
Methanothermobacter thermautotrophicus str. Delta H	NC_000916	NC_000916	NC_000916
Methylacidiphilum infernorum V4	NC_010794	NC_010794	NC_010794
Methylibium petroleiphilum PM1	Chromosome, Plasmid RPME01	Chromosome, Plasmid RPME01	Chromosome, Plasmid RPME01
Methylobacillus flagellatus KT	NC_007947	NC_007947	NC_007947
Methylobacterium chloromethanicum CM4	Chromosome, Plasmid pMCHL01, Plasmid pMCHL02	Chromosome, Plasmid pMCHL01, Plasmid pMCHL02	Chromosome, Plasmid pMCHL01, Plasmid pMCHL02
Methylobacterium extorquens AM1	Chromosome, Megaplasmid, Plasmid p1META1, Plasmid p2META1, Plasmid p3META1	Chromosome, Megaplasmid, Plasmid p1META1, Plasmid p2META1, Plasmid p3META1	Chromosome, Megaplasmid, Plasmid p1META1, Plasmid p2META1, Plasmid p3META1
Methylobacterium extorquens DM4	Plasmid p1METDI, Chromosome, Plasmid p2METDI	Plasmid p1METDI, Chromosome, Plasmid p2METDI	Plasmid p1METDI, Chromosome, Plasmid p2METDI
Methylobacterium extorquens PA1	NC_010172	NC_010172	NC_010172
Methylobacterium nodulans ORS 2060	Chromosome, Plasmid pMNOD01, Plasmid pMNOD02, Plasmid pMNOD03, Plasmid pMNOD04, Plasmid pMNOD05, Plasmid pMNOD06, Plasmid pMNOD07	Chromosome, Plasmid pMNOD01, Plasmid pMNOD02, Plasmid pMNOD03, Plasmid pMNOD04, Plasmid pMNOD05, Plasmid pMNOD06, Plasmid pMNOD07	Chromosome, Plasmid pMNOD01, Plasmid pMNOD02, Plasmid pMNOD03, Plasmid pMNOD04, Plasmid pMNOD05, Plasmid pMNOD06, Plasmid pMNOD07
Methylobacterium populi BJ001	Chromosome, Plasmid pMPOP01, Plasmid pMPOP02	Chromosome, Plasmid pMPOP01, Plasmid pMPOP02	Chromosome, Plasmid pMPOP01, Plasmid pMPOP02
Methylobacterium radiotolerans JCM 2831	Plasmid pMRAD08, Chromosome, Plasmid pMRAD02, Plasmid pMRAD01, Plasmid pMRAD03, Plasmid pMRAD06, Plasmid pMRAD07, Plasmid pMRAD04, Plasmid pMRAD05	Plasmid pMRAD08, Chromosome, Plasmid pMRAD02, Plasmid pMRAD01, Plasmid pMRAD03, Plasmid pMRAD06, Plasmid pMRAD07, Plasmid pMRAD04, Plasmid pMRAD05	Plasmid pMRAD08, Chromosome, Plasmid pMRAD02, Plasmid pMRAD01, Plasmid pMRAD03, Plasmid pMRAD06, Plasmid pMRAD07, Plasmid pMRAD04, Plasmid pMRAD05
Methylobacterium sp. 4-46	Chromosome, Plasmid pM44601, Plasmid pM44602	Chromosome, Plasmid pM44601, Plasmid pM44602	Chromosome, Plasmid pM44601, Plasmid pM44602
Methylocella silvestris BL2	NC_011666	NC_011666	NC_011666
Methylococcus capsulatus str. Bath	NC_002977	NC_002977	NC_002977
Methylotenera mobilis JLW8	NC_012968	NC_012968	NC_012968
Methylovorus sp. SIP3-4	Plasmid pMsip02, Chromosome, Plasmid pMsip01	Plasmid pMsip02, Chromosome, Plasmid pMsip01	Plasmid pMsip02, Chromosome, Plasmid pMsip01
Micrococcus luteus NCTC 2665	NC_012803	NC_012803	NC_012803
Microcystis aeruginosa NIES-843	NC_010296	NC_010296	NC_010296
Moorella thermoacetica ATCC 39073	NC_007644	NC_007644	NC_007644
Mycobacterium abscessus	Chromosome, Plasmid unnamed	Chromosome, Plasmid unnamed	Chromosome, Plasmid unnamed
Mycobacterium avium 104	NC_008595	NC_008595	NC_008595
Mycobacterium avium subsp. paratuberculosis K-10	NC_002944	NC_002944	NC_002944
Mycobacterium bovis AF2122/97	NC_002945	NC_002945	NC_002945
Mycobacterium bovis BCG
Mycobacterium bovis BCG str. Pasteur 1173P2	NC_008769	NC_008769	NC_008769
Mycobacterium bovis BCG str. Tokyo 172	NC_012207	NC_012207	NC_012207
Mycobacterium gilvum PYR-GCK	Chromosome, Plasmid pMFLV01, Plasmid pMFLV02, Plasmid pMFLV03	Chromosome, Plasmid pMFLV01, Plasmid pMFLV02, Plasmid pMFLV03	Chromosome, Plasmid pMFLV01, Plasmid pMFLV02, Plasmid pMFLV03
Mycobacterium leprae Br4923	NC_011896	NC_011896	NC_011896
Mycobacterium leprae TN	NC_002677	NC_002677	NC_002677
Mycobacterium marinum M	Chromosome, Plasmid pMM23	Chromosome, Plasmid pMM23	Chromosome, Plasmid pMM23
Mycobacterium smegmatis str. MC2 155	NC_008596	NC_008596	NC_008596
Mycobacterium sp. JLS	NC_009077	NC_009077	NC_009077
Mycobacterium sp. KMS	Plasmid pMKMS01, Chromosome, Plasmid pMKMS02	Plasmid pMKMS01, Chromosome, Plasmid pMKMS02	Plasmid pMKMS01, Chromosome, Plasmid pMKMS02
Mycobacterium sp. MCS	Chromosome, Plasmid1	Chromosome, Plasmid1	Chromosome, Plasmid1
Mycobacterium tuberculosis CDC1551	NC_002755	NC_002755	NC_002755
Mycobacterium tuberculosis F11	NC_009565	NC_009565	NC_009565
Mycobacterium tuberculosis H37Ra	NC_009525	NC_009525	NC_009525
Mycobacterium tuberculosis H37Rv	NC_000962	NC_000962	NC_000962
Mycobacterium tuberculosis KZN 1435	NC_012943	NC_012943	NC_012943
Mycobacterium ulcerans Agy99	Chromosome, Plasmid pMUM001	Chromosome, Plasmid pMUM001	Chromosome, Plasmid pMUM001
Mycobacterium vanbaalenii PYR-1	NC_008726	NC_008726	NC_008726
Mycoplasma agalactiae PG2	NC_009497	NC_009497	NC_009497
Mycoplasma arthritidis 158L3-1	NC_011025	NC_011025	NC_011025
Mycoplasma capricolum subsp. capricolum ATCC 27343	NC_007633	NC_007633	NC_007633
Mycoplasma conjunctivae	NC_012806	NC_012806	NC_012806
Mycoplasma gallisepticum R	NC_004829	NC_004829	NC_004829
Mycoplasma genitalium G37	NC_000908	NC_000908	NC_000908
Mycoplasma hyopneumoniae 232	NC_006360	NC_006360	NC_006360
Mycoplasma hyopneumoniae 7448	NC_007332	NC_007332	NC_007332
Mycoplasma hyopneumoniae J	NC_007295	NC_007295	NC_007295
Mycoplasma mobile 163K	NC_006908	NC_006908	NC_006908
Mycoplasma mycoides subsp. capri str. GM12	CP001621	CP001621	CP001621
Mycoplasma mycoides subsp. capri str. GM12	CP001668	CP001668	CP001668
Mycoplasma mycoides subsp. mycoides SC str. PG1	NC_005364	NC_005364	NC_005364
Mycoplasma penetrans HF-2	NC_004432	NC_004432	NC_004432
Mycoplasma pneumoniae M129	NC_000912	NC_000912	NC_000912
Mycoplasma pulmonis UAB CTIP	NC_002771	NC_002771	NC_002771
Mycoplasma synoviae 53	NC_007294	NC_007294	NC_007294
Myxococcus xanthus DK 1622	NC_008095	NC_008095	NC_008095
Nanoarchaeum equitans Kin4-M	NC_005213	NC_005213	NC_005213
Natranaerobius thermophilus JW/NM-WN-LF	Chromosome, Plasmid pNTHE01, Plasmid pNTHE02	Chromosome, Plasmid pNTHE01, Plasmid pNTHE02	Chromosome, Plasmid pNTHE01, Plasmid pNTHE02
Natronomonas pharaonis DSM 2160	Plasmid PL131, Chromosome, Plasmid PL23	Plasmid PL131, Chromosome, Plasmid PL23	Plasmid PL131, Chromosome, Plasmid PL23
Nautilia profundicola AmH	NC_012115	NC_012115	NC_012115
Neisseria gonorrhoeae FA 1090	NC_002946	NC_002946	NC_002946
Neisseria gonorrhoeae NCCP11945	Chromosome, Plasmid pNGK	Chromosome, Plasmid pNGK	Chromosome, Plasmid pNGK
Neisseria meningitidis 053442	NC_010120	NC_010120	NC_010120
Neisseria meningitidis FAM18	NC_008767	NC_008767	NC_008767
Neisseria meningitidis MC58	NC_003112	NC_003112	NC_003112
Neisseria meningitidis Z2491	NC_003116	NC_003116	NC_003116
Neisseria meningitidis alpha14	NC_013016	NC_013016	NC_013016
Neorickettsia risticii str. Illinois	NC_013009	NC_013009	NC_013009
Neorickettsia sennetsu str. Miyayama	NC_007798	NC_007798	NC_007798
Nitratiruptor sp. SB155-2	NC_009662	NC_009662	NC_009662
Nitrobacter hamburgensis X14	Plasmid 1, Chromosome, Plasmid 2, Plasmid 3	Plasmid 1, Chromosome, Plasmid 2, Plasmid 3	Plasmid 1, Chromosome, Plasmid 2, Plasmid 3
Nitrobacter winogradskyi Nb-255	NC_007406	NC_007406	NC_007406
Nitrosococcus oceani ATCC 19707	Plasmid A, Chromosome	Plasmid A, Chromosome	Plasmid A, Chromosome
Nitrosomonas europaea ATCC 19718	NC_004757	NC_004757	NC_004757
Nitrosomonas eutropha C91	Chromosome, Plasmid1, Plasmid2	Chromosome, Plasmid1, Plasmid2	Chromosome, Plasmid1, Plasmid2
Nitrosopumilus maritimus SCM1	NC_010085	NC_010085	NC_010085
Nitrosospira multiformis ATCC 25196	Chromosome 1, Plasmid 1, Plasmid 2, Plasmid 3	Chromosome 1, Plasmid 1, Plasmid 2, Plasmid 3	Chromosome 1, Plasmid 1, Plasmid 2, Plasmid 3
Nocardia farcinica IFM 10152	Chromosome, Plasmid pNF1, Plasmid pNF2	Chromosome, Plasmid pNF1, Plasmid pNF2	Chromosome, Plasmid pNF1, Plasmid pNF2
Nocardioides sp. JS614	Chromosome, Plasmid pNOCA01	Chromosome, Plasmid pNOCA01	Chromosome, Plasmid pNOCA01
Nostoc punctiforme PCC 73102	Chromosome, Plasmid pNPUN01, Plasmid pNPUN02, Plasmid pNPUN03, Plasmid pNPUN04, Plasmid pNPUN05	Chromosome, Plasmid pNPUN01, Plasmid pNPUN02, Plasmid pNPUN03, Plasmid pNPUN04, Plasmid pNPUN05	Chromosome, Plasmid pNPUN01, Plasmid pNPUN02, Plasmid pNPUN03, Plasmid pNPUN04, Plasmid pNPUN05
Nostoc sp. PCC 7120	Chromosome, Plasmid pCC7120alpha, Plasmid pCC7120beta, Plasmid pCC7120gamma, Plasmid pCC7120delta, Plasmid pCC7120epsilon, Plasmid pCC7120zeta	Chromosome, Plasmid pCC7120alpha, Plasmid pCC7120beta, Plasmid pCC7120gamma, Plasmid pCC7120delta, Plasmid pCC7120epsilon, Plasmid pCC7120zeta	Chromosome, Plasmid pCC7120alpha, Plasmid pCC7120beta, Plasmid pCC7120gamma, Plasmid pCC7120delta, Plasmid pCC7120epsilon, Plasmid pCC7120zeta
Novosphingobium aromaticivorans DSM 12444	Plasmid pNL1, Chromosome, Plasmid pNL2	Plasmid pNL1, Chromosome, Plasmid pNL2	Plasmid pNL1, Chromosome, Plasmid pNL2
Oceanobacillus iheyensis HTE831	NC_004193	NC_004193	NC_004193
Ochrobactrum anthropi ATCC 49188	Chromosome 1, Plasmid pOANT01, Chromosome 2, Plasmid pOANT02, Plasmid pOANT03, Plasmid pOANT04	Chromosome 1, Plasmid pOANT01, Chromosome 2, Plasmid pOANT02, Plasmid pOANT03, Plasmid pOANT04	Chromosome 1, Plasmid pOANT01, Chromosome 2, Plasmid pOANT02, Plasmid pOANT03, Plasmid pOANT04
Oenococcus oeni PSU-1	NC_008528	NC_008528	NC_008528
Oligotropha carboxidovorans OM5	NC_011386	NC_011386	NC_011386
Onion yellows phytoplasma OY-M	NC_005303	NC_005303	NC_005303
Opitutus terrae PB90-1	NC_010571	NC_010571	NC_010571
Orientia tsutsugamushi str. Boryong	NC_009488	NC_009488	NC_009488
Orientia tsutsugamushi str. Ikeda	NC_010793	NC_010793	NC_010793
Paenibacillus sp. JDR-2	NC_012914	NC_012914	NC_012914
Parabacteroides distasonis ATCC 8503	NC_009615	NC_009615	NC_009615
Paracoccus denitrificans PD1222	Chromosome 1, Chromosome 2, Plasmid 1	Chromosome 1, Chromosome 2, Plasmid 1	Chromosome 1, Chromosome 2, Plasmid 1
Parvibaculum lavamentivorans DS-1	NC_009719	NC_009719	NC_009719
Pasteurella multocida subsp. multocida str. Pm70	NC_002663	NC_002663	NC_002663
Pectobacterium atrosepticum SCRI1043	NC_004547	NC_004547	NC_004547
Pectobacterium carotovorum subsp. carotovorum PC1	NC_012917	NC_012917	NC_012917
Pediococcus pentosaceus ATCC 25745	NC_008525	NC_008525	NC_008525
Pedobacter heparinus DSM 2366	NC_013061	NC_013061	NC_013061
Pelobacter carbinolicus DSM 2380	NC_007498	NC_007498	NC_007498
Pelobacter propionicus DSM 2379	Chromosome, Plasmid pPRO1, Plasmid pPRO2	Chromosome, Plasmid pPRO1, Plasmid pPRO2	Chromosome, Plasmid pPRO1, Plasmid pPRO2
Pelodictyon luteolum DSM 273	NC_007512	NC_007512	NC_007512
Pelodictyon phaeoclathratiforme BU-1	NC_011060	NC_011060	NC_011060
Pelotomaculum thermopropionicum SI	NC_009454	NC_009454	NC_009454
Persephonella marina EX-H1	Chromosome, Plasmid unnamed	Chromosome, Plasmid unnamed	Chromosome, Plasmid unnamed
Petrotoga mobilis SJ95	NC_010003	NC_010003	NC_010003
Phenylobacterium zucineum HLK1	Chromosome, Plasmid unnamed	Chromosome, Plasmid unnamed	Chromosome, Plasmid unnamed
Photobacterium profundum SS9	Chromosome 1, Chromosome 2, Plasmid pPBPR1	Chromosome 1, Chromosome 2, Plasmid pPBPR1	Chromosome 1, Chromosome 2, Plasmid pPBPR1
Photorhabdus asymbiotica	Plasmid pPAT, Chromosome	Plasmid pPAT, Chromosome	Plasmid pPAT, Chromosome
Photorhabdus luminescens subsp. laumondii TTO1	NC_005126	NC_005126	NC_005126
Picrophilus torridus DSM 9790	NC_005877	NC_005877	NC_005877
Polaromonas naphthalenivorans CJ2	Plasmid pPNAP01, Chromosome, Plasmid pPNAP02, Plasmid pPNAP03, Plasmid pPNAP04, Plasmid pPNAP05, Plasmid pPNAP06, Plasmid pPNAP07, Plasmid pPNAP08	Plasmid pPNAP01, Chromosome, Plasmid pPNAP02, Plasmid pPNAP03, Plasmid pPNAP04, Plasmid pPNAP05, Plasmid pPNAP06, Plasmid pPNAP07, Plasmid pPNAP08	Plasmid pPNAP01, Chromosome, Plasmid pPNAP02, Plasmid pPNAP03, Plasmid pPNAP04, Plasmid pPNAP05, Plasmid pPNAP06, Plasmid pPNAP07, Plasmid pPNAP08
Polaromonas sp. JS666	Chromosome, Plasmid 1, Plasmid 2	Chromosome, Plasmid 1, Plasmid 2	Chromosome, Plasmid 1, Plasmid 2
Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1	NC_009379	NC_009379	NC_009379
Polynucleobacter necessarius subsp. necessarius STIR1	NC_010531	NC_010531	NC_010531
Porphyromonas gingivalis ATCC 33277	NC_010729	NC_010729	NC_010729
Porphyromonas gingivalis W83	NC_002950	NC_002950	NC_002950
Prochlorococcus marinus str. AS9601	NC_008816	NC_008816	NC_008816
Prochlorococcus marinus str. MIT 9211	NC_009976	NC_009976	NC_009976
Prochlorococcus marinus str. MIT 9215	NC_009840	NC_009840	NC_009840
Prochlorococcus marinus str. MIT 9301	NC_009091	NC_009091	NC_009091
Prochlorococcus marinus str. MIT 9303	NC_008820	NC_008820	NC_008820
Prochlorococcus marinus str. MIT 9312	NC_007577	NC_007577	NC_007577
Prochlorococcus marinus str. MIT 9313	NC_005071	NC_005071	NC_005071
Prochlorococcus marinus str. MIT 9515	NC_008817	NC_008817	NC_008817
Prochlorococcus marinus str. NATL1A	NC_008819	NC_008819	NC_008819
Prochlorococcus marinus str. NATL2A	NC_007335	NC_007335	NC_007335
Prochlorococcus marinus subsp. marinus str. CCMP1375	NC_005042	NC_005042	NC_005042
Prochlorococcus marinus subsp. pastoris str. CCMP1986	NC_005072	NC_005072	NC_005072
Propionibacterium acnes KPA171202	NC_006085	NC_006085	NC_006085
Prosthecochloris aestuarii DSM 271	Chromosome, Plasmid pPAES01	Chromosome, Plasmid pPAES01	Chromosome, Plasmid pPAES01
Proteus mirabilis HI4320	Plasmid pHI4320, Chromosome	Plasmid pHI4320, Chromosome	Plasmid pHI4320, Chromosome
Pseudoalteromonas atlantica T6c	NC_008228	NC_008228	NC_008228
Pseudoalteromonas haloplanktis TAC125	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Pseudomonas aeruginosa LESB58	NC_011770	NC_011770	NC_011770
Pseudomonas aeruginosa PA7	NC_009656	NC_009656	NC_009656
Pseudomonas aeruginosa PAO1	NC_002516	NC_002516	NC_002516
Pseudomonas aeruginosa UCBPP-PA14	NC_008463	NC_008463	NC_008463
Pseudomonas entomophila L48	NC_008027	NC_008027	NC_008027
Pseudomonas fluorescens Pf-5	NC_004129	NC_004129	NC_004129
Pseudomonas fluorescens Pf0-1	NC_007492	NC_007492	NC_007492
Pseudomonas fluorescens SBW25	Plasmid pQBR103, Chromosome	Plasmid pQBR103, Chromosome	Plasmid pQBR103, Chromosome
Pseudomonas mendocina ymp	NC_009439	NC_009439	NC_009439
Pseudomonas putida F1	NC_009512	NC_009512	NC_009512
Pseudomonas putida GB-1	NC_010322	NC_010322	NC_010322
Pseudomonas putida KT2440	NC_002947	NC_002947	NC_002947
Pseudomonas putida W619	NC_010501	NC_010501	NC_010501
Pseudomonas stutzeri A1501	NC_009434	NC_009434	NC_009434
Pseudomonas syringae pv. phaseolicola 1448A	Large plasmid, Chromosome, Small plasmid	Large plasmid, Chromosome, Small plasmid	Large plasmid, Chromosome, Small plasmid
Pseudomonas syringae pv. syringae B728a	NC_007005	NC_007005	NC_007005
Pseudomonas syringae pv. tomato str. DC3000	Chromosome, Plasmid pDC3000B, Plasmid pDC3000A	Chromosome, Plasmid pDC3000B, Plasmid pDC3000A	Chromosome, Plasmid pDC3000B, Plasmid pDC3000A
Psychrobacter arcticus 273-4	NC_007204	NC_007204	NC_007204
Psychrobacter cryohalolentis K5	Plasmid 1, Chromosome	Plasmid 1, Chromosome	Plasmid 1, Chromosome
Psychrobacter sp. PRwf-1	Plasmid pRWF101, Chromosome, Plasmid pRWF102	Plasmid pRWF101, Chromosome, Plasmid pRWF102	Plasmid pRWF101, Chromosome, Plasmid pRWF102
Psychromonas ingrahamii 37	NC_008709	NC_008709	NC_008709
Pyrobaculum aerophilum str. IM2	NC_003364	NC_003364	NC_003364
Pyrobaculum arsenaticum DSM 13514	NC_009376	NC_009376	NC_009376
Pyrobaculum calidifontis JCM 11548	NC_009073	NC_009073	NC_009073
Pyrobaculum islandicum DSM 4184	NC_008701	NC_008701	NC_008701
Pyrococcus abyssi GE5	Chromosome, Plasmid pGT5	Chromosome, Plasmid pGT5	Chromosome, Plasmid pGT5
Pyrococcus furiosus DSM 3638	NC_003413	NC_003413	NC_003413
Pyrococcus horikoshii OT3	NC_000961	NC_000961	NC_000961
Ralstonia eutropha H16	Chromosome 1, Chromosome 2, Megaplasmid pHG1	Chromosome 1, Chromosome 2, Megaplasmid pHG1	Chromosome 1, Chromosome 2, Megaplasmid pHG1
Ralstonia eutropha JMP134	Megaplasmid, Chromosome 2, Plasmid 1, Chromosome 1	Megaplasmid, Chromosome 2, Plasmid 1, Chromosome 1	Megaplasmid, Chromosome 2, Plasmid 1, Chromosome 1
Ralstonia metallidurans CH34	Chromosome 1, Chromosome 2, Plasmid 1, Plasmid 2	Chromosome 1, Chromosome 2, Plasmid 1, Plasmid 2	Chromosome 1, Chromosome 2, Plasmid 1, Plasmid 2
Ralstonia pickettii 12D	Plasmid pRp12D03, Chromosome 1, Plasmid pRp12D02, Chromosome 2, Plasmid pRp12D01	Plasmid pRp12D03, Chromosome 1, Plasmid pRp12D02, Chromosome 2, Plasmid pRp12D01	Plasmid pRp12D03, Chromosome 1, Plasmid pRp12D02, Chromosome 2, Plasmid pRp12D01
Ralstonia pickettii 12J	Chromosome 1, Plasmid pRPIC01, Chromosome 2	Chromosome 1, Plasmid pRPIC01, Chromosome 2	Chromosome 1, Plasmid pRPIC01, Chromosome 2
Ralstonia solanacearum GMI1000	Chromosome, Plasmid pGMI1000MP	Chromosome, Plasmid pGMI1000MP	Chromosome, Plasmid pGMI1000MP
Renibacterium salmoninarum ATCC 33209	NC_010168	NC_010168	NC_010168
Rhizobium etli CFN 42	Chromosome, Plasmid p42a, Plasmid p42b, Plasmid p42c, Plasmid p42d, Plasmid p42e, Plasmid p42f	Chromosome, Plasmid p42a, Plasmid p42b, Plasmid p42c, Plasmid p42d, Plasmid p42e, Plasmid p42f	Chromosome, Plasmid p42a, Plasmid p42b, Plasmid p42c, Plasmid p42d, Plasmid p42e, Plasmid p42f
Rhizobium etli CIAT 652	Chromosome, Plasmid pA, Plasmid pB, Plasmid pC	Chromosome, Plasmid pA, Plasmid pB, Plasmid pC	Chromosome, Plasmid pA, Plasmid pB, Plasmid pC
Rhizobium leguminosarum bv. trifolii WSM1325	Plasmid pR132505, Chromosome, Plasmid pR132501, Plasmid pR132504, Plasmid pR132503, Plasmid pR132502	Plasmid pR132505, Chromosome, Plasmid pR132501, Plasmid pR132504, Plasmid pR132503, Plasmid pR132502	Plasmid pR132505, Chromosome, Plasmid pR132501, Plasmid pR132504, Plasmid pR132503, Plasmid pR132502
Rhizobium leguminosarum bv. trifolii WSM2304	Chromosome, Plasmid pRLG201, Plasmid pRLG202, Plasmid pRLG204, Plasmid pRLG203	Chromosome, Plasmid pRLG201, Plasmid pRLG202, Plasmid pRLG204, Plasmid pRLG203	Chromosome, Plasmid pRLG201, Plasmid pRLG202, Plasmid pRLG204, Plasmid pRLG203
Rhizobium leguminosarum bv. viciae 3841	Chromosome, Plasmid pRL7, Plasmid pRL8, Plasmid pRL9, Plasmid pRL10, Plasmid pRL11, Plasmid pRL12	Chromosome, Plasmid pRL7, Plasmid pRL8, Plasmid pRL9, Plasmid pRL10, Plasmid pRL11, Plasmid pRL12	Chromosome, Plasmid pRL7, Plasmid pRL8, Plasmid pRL9, Plasmid pRL10, Plasmid pRL11, Plasmid pRL12
Rhizobium sp. NGR234	Chromosome, Plasmid pNGR234a, Plasmid pNGR234b	Chromosome, Plasmid pNGR234a, Plasmid pNGR234b	Chromosome, Plasmid pNGR234a, Plasmid pNGR234b
Rhodobacter sphaeroides 2.4.1	Chromosome 1, Chromosome 2, Plasmid A, Plasmid B, Plasmid C, Plasmid D, Plasmid E	Chromosome 1, Chromosome 2, Plasmid A, Plasmid B, Plasmid C, Plasmid D, Plasmid E	Chromosome 1, Chromosome 2, Plasmid A, Plasmid B, Plasmid C, Plasmid D, Plasmid E
Rhodobacter sphaeroides ATCC 17025	Chromosome, Plasmid pRSPA01, Plasmid pRSPA02, Plasmid pRSPA03, Plasmid pRSPA04, Plasmid pRSPA05	Chromosome, Plasmid pRSPA01, Plasmid pRSPA02, Plasmid pRSPA03, Plasmid pRSPA04, Plasmid pRSPA05	Chromosome, Plasmid pRSPA01, Plasmid pRSPA02, Plasmid pRSPA03, Plasmid pRSPA04, Plasmid pRSPA05
Rhodobacter sphaeroides ATCC 17029	Chromosome 1, Chromosome 2, Plasmid pRSPH01	Chromosome 1, Chromosome 2, Plasmid pRSPH01	Chromosome 1, Chromosome 2, Plasmid pRSPH01
Rhodobacter sphaeroides KD131	Chromosome 1, Plasmid pRSKD131A, Chromosome 2, Plasmid pRSKD131B	Chromosome 1, Plasmid pRSKD131A, Chromosome 2, Plasmid pRSKD131B	Chromosome 1, Plasmid pRSKD131A, Chromosome 2, Plasmid pRSKD131B
Rhodococcus erythropolis PR4	Chromosome, Plasmid pREC1, Plasmid pREC2, Plasmid pREL1	Chromosome, Plasmid pREC1, Plasmid pREC2, Plasmid pREL1	Chromosome, Plasmid pREC1, Plasmid pREC2, Plasmid pREL1
Rhodococcus jostii RHA1	Chromosome, Plasmid pRHL1, Plasmid pRHL2, Plasmid pRHL3	Chromosome, Plasmid pRHL1, Plasmid pRHL2, Plasmid pRHL3	Chromosome, Plasmid pRHL1, Plasmid pRHL2, Plasmid pRHL3
Rhodococcus opacus B4	NC_012522	NC_012522	NC_012522
Rhodococcus opacus B4
Rhodoferax ferrireducens T118	Chromosome, Plasmid1	Chromosome, Plasmid1	Chromosome, Plasmid1
Rhodopirellula baltica SH 1	NC_005027	NC_005027	NC_005027
Rhodopseudomonas palustris BisA53	NC_008435	NC_008435	NC_008435
Rhodopseudomonas palustris BisB18	NC_007925	NC_007925	NC_007925
Rhodopseudomonas palustris BisB5	NC_007958	NC_007958	NC_007958
Rhodopseudomonas palustris CGA009	Plasmid pRPA, Chromosome	Plasmid pRPA, Chromosome	Plasmid pRPA, Chromosome
Rhodopseudomonas palustris HaA2	NC_007778	NC_007778	NC_007778
Rhodopseudomonas palustris TIE-1	NC_011004	NC_011004	NC_011004
Rhodospirillum centenum SW	NC_011420	NC_011420	NC_011420
Rhodospirillum rubrum ATCC 11170	Plasmid unnamed, Chromosome	Plasmid unnamed, Chromosome	Plasmid unnamed, Chromosome
Rickettsia africae ESF-5	Chromosome, Plasmid pRAF	Chromosome, Plasmid pRAF	Chromosome, Plasmid pRAF
Rickettsia akari str. Hartford	NC_009881	NC_009881	NC_009881
Rickettsia bellii OSU 85-389	NC_009883	NC_009883	NC_009883
Rickettsia bellii RML369-C	NC_007940	NC_007940	NC_007940
Rickettsia canadensis str. McKiel	NC_009879	NC_009879	NC_009879
Rickettsia conorii str. Malish 7	NC_003103	NC_003103	NC_003103
Rickettsia felis URRWXCal2	Chromosome, Plasmid pRF, Plasmid pRFdelta	Chromosome, Plasmid pRF, Plasmid pRFdelta	Chromosome, Plasmid pRF, Plasmid pRFdelta
Rickettsia massiliae MTU5	Plasmid pRMA, Chromosome	Plasmid pRMA, Chromosome	Plasmid pRMA, Chromosome
Rickettsia peacockii str. Rustic	Chromosome, Plasmid pRPR	Chromosome, Plasmid pRPR	Chromosome, Plasmid pRPR
Rickettsia prowazekii str. Madrid E	NC_000963	NC_000963	NC_000963
Rickettsia rickettsii str. 'Sheila Smith'	NC_009882	NC_009882	NC_009882
Rickettsia rickettsii str. Iowa	NC_010263	NC_010263	NC_010263
Rickettsia typhi str. Wilmington	NC_006142	NC_006142	NC_006142
Roseiflexus castenholzii DSM 13941	NC_009767	NC_009767	NC_009767
Roseiflexus sp. RS-1	NC_009523	NC_009523	NC_009523
Roseobacter denitrificans OCh 114	Chromosome, Plasmid pTB1, Plasmid pTB2, Plasmid pTB3, Plasmid pTB4	Chromosome, Plasmid pTB1, Plasmid pTB2, Plasmid pTB3, Plasmid pTB4	Chromosome, Plasmid pTB1, Plasmid pTB2, Plasmid pTB3, Plasmid pTB4
Rubrobacter xylanophilus DSM 9941	NC_008148	NC_008148	NC_008148
Ruegeria pomeroyi DSS-3	Chromosome, Megaplasmid	Chromosome, Megaplasmid	Chromosome, Megaplasmid
Ruegeria sp. TM1040	Plasmid unnamed, Chromosome, Mega plasmid	Plasmid unnamed, Chromosome, Mega plasmid	Plasmid unnamed, Chromosome, Mega plasmid
Saccharomonospora viridis DSM 43017	NC_013159	NC_013159	NC_013159
Saccharophagus degradans 2-40	NC_007912	NC_007912	NC_007912
Saccharopolyspora erythraea NRRL 2338	NC_009142	NC_009142	NC_009142
Salinibacter ruber DSM 13855	Chromosome, Plasmid pSR35	Chromosome, Plasmid pSR35	Chromosome, Plasmid pSR35
Salinispora arenicola CNS-205	NC_009953	NC_009953	NC_009953
Salinispora tropica CNB-440	NC_009380	NC_009380	NC_009380
Salmonella enterica subsp. arizonae serovar 62:z4,z23:--	NC_010067	NC_010067	NC_010067
Salmonella enterica subsp. enterica serovar Agona str. SL483	Plasmid unnamed, Chromosome	Plasmid unnamed, Chromosome	Plasmid unnamed, Chromosome
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67	Plasmid pSCV50, Plasmid pSC138, Chromosome	Plasmid pSCV50, Plasmid pSC138, Chromosome	Plasmid pSCV50, Plasmid pSC138, Chromosome
Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853	Plasmid pCT02021853_74, Chromosome	Plasmid pCT02021853_74, Chromosome	Plasmid pCT02021853_74, Chromosome
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109	NC_011294	NC_011294	NC_011294
Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91	NC_011274	NC_011274	NC_011274
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476	Plasmid pSL476_91, Chromosome, Plasmid pSL476_3	Plasmid pSL476_91, Chromosome, Plasmid pSL476_3	Plasmid pSL476_91, Chromosome, Plasmid pSL476_3
Salmonella enterica subsp. enterica serovar Newport str. SL254	Chromosome, Plasmid pSN254, Plasmid pSL254_3	Chromosome, Plasmid pSN254, Plasmid pSL254_3	Chromosome, Plasmid pSN254, Plasmid pSL254_3
Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601	NC_011147	NC_011147	NC_011147
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150	NC_006511	NC_006511	NC_006511
Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7	NC_010102	NC_010102	NC_010102
Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594	Chromosome, Plasmid pSPCV	Chromosome, Plasmid pSPCV	Chromosome, Plasmid pSPCV
Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633	Plasmid pCVM19633_110, Chromosome, Plasmid pCVM19633_4	Plasmid pCVM19633_110, Chromosome, Plasmid pCVM19633_4	Plasmid pCVM19633_110, Chromosome, Plasmid pCVM19633_4
Salmonella enterica subsp. enterica serovar Typhi str. CT18	Chromosome, Plasmid pHCM1, Plasmid pHCM2	Chromosome, Plasmid pHCM1, Plasmid pHCM2	Chromosome, Plasmid pHCM1, Plasmid pHCM2
Salmonella enterica subsp. enterica serovar Typhi str. Ty2	NC_004631	NC_004631	NC_004631
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	Chromosome, Plasmid pSLT	Chromosome, Plasmid pSLT	Chromosome, Plasmid pSLT
Serratia proteamaculans 568	Plasmid pSPRO01, Chromosome	Plasmid pSPRO01, Chromosome	Plasmid pSPRO01, Chromosome
Shewanella amazonensis SB2B	NC_008700	NC_008700	NC_008700
Shewanella baltica OS155	Plasmid pSbal01, Chromosome, Plasmid pSbal02, Plasmid pSbal03, Plasmid pSbal04	Plasmid pSbal01, Chromosome, Plasmid pSbal02, Plasmid pSbal03, Plasmid pSbal04	Plasmid pSbal01, Chromosome, Plasmid pSbal02, Plasmid pSbal03, Plasmid pSbal04
Shewanella baltica OS185	Plasmid pS18501, Chromosome	Plasmid pS18501, Chromosome	Plasmid pS18501, Chromosome
Shewanella baltica OS195	Plasmid pS19501, Chromosome, Plasmid pS19502, Plasmid pS19503	Plasmid pS19501, Chromosome, Plasmid pS19502, Plasmid pS19503	Plasmid pS19501, Chromosome, Plasmid pS19502, Plasmid pS19503
Shewanella baltica OS223	Chromosome, Plasmid pS22301, Plasmid pS22302, Plasmid pS22303	Chromosome, Plasmid pS22301, Plasmid pS22302, Plasmid pS22303	Chromosome, Plasmid pS22301, Plasmid pS22302, Plasmid pS22303
Shewanella denitrificans OS217	NC_007954	NC_007954	NC_007954
Shewanella frigidimarina NCIMB 400	NC_008345	NC_008345	NC_008345
Shewanella halifaxensis HAW-EB4	NC_010334	NC_010334	NC_010334
Shewanella loihica PV-4	NC_009092	NC_009092	NC_009092
Shewanella oneidensis MR-1	Chromosome, Plasmid pMR-1	Chromosome, Plasmid pMR-1	Chromosome, Plasmid pMR-1
Shewanella pealeana ATCC 700345	NC_009901	NC_009901	NC_009901
Shewanella piezotolerans WP3	NC_011566	NC_011566	NC_011566
Shewanella putrefaciens CN-32	NC_009438	NC_009438	NC_009438
Shewanella sediminis HAW-EB3	NC_009831	NC_009831	NC_009831
Shewanella sp. ANA-3	Plasmid 1, Chromosome 1	Plasmid 1, Chromosome 1	Plasmid 1, Chromosome 1
Shewanella sp. MR-4	NC_008321	NC_008321	NC_008321
Shewanella sp. MR-7	Plasmid1, Chromosome	Plasmid1, Chromosome	Plasmid1, Chromosome
Shewanella sp. W3-18-1	NC_008750	NC_008750	NC_008750
Shewanella woodyi ATCC 51908	NC_010506	NC_010506	NC_010506
Shigella boydii CDC 3083-94	Plasmid pBS512_2, Chromosome, Plasmid pBS512_33, Plasmid pBS512_5, Plasmid pBS512_211, Plasmid pBS512_7	Plasmid pBS512_2, Chromosome, Plasmid pBS512_33, Plasmid pBS512_5, Plasmid pBS512_211, Plasmid pBS512_7	Plasmid pBS512_2, Chromosome, Plasmid pBS512_33, Plasmid pBS512_5, Plasmid pBS512_211, Plasmid pBS512_7
Shigella boydii Sb227	Plasmid pSB4_227, Chromosome	Plasmid pSB4_227, Chromosome	Plasmid pSB4_227, Chromosome
Shigella dysenteriae Sd197	Plasmid pSD1_197, Chromosome, Plasmid pSD197_spA	Plasmid pSD1_197, Chromosome, Plasmid pSD197_spA	Plasmid pSD1_197, Chromosome, Plasmid pSD197_spA
Shigella flexneri 2a str. 2457T	NC_004741	NC_004741	NC_004741
Shigella flexneri 2a str. 301	Chromosome, Plasmid pCP301	Chromosome, Plasmid pCP301	Chromosome, Plasmid pCP301
Shigella flexneri 5 str. 8401	NC_008258	NC_008258	NC_008258
Shigella sonnei Ss046	Chromosome, Plasmid pSS, Plasmid pSS046_spA, Plasmid pSS046_spB, Plasmid pSS046_spC	Chromosome, Plasmid pSS, Plasmid pSS046_spA, Plasmid pSS046_spB, Plasmid pSS046_spC	Chromosome, Plasmid pSS, Plasmid pSS046_spA, Plasmid pSS046_spB, Plasmid pSS046_spC
Sinorhizobium medicae WSM419	Plasmid pSMED01, Chromosome, Plasmid pSMED02, Plasmid pSMED03	Plasmid pSMED01, Chromosome, Plasmid pSMED02, Plasmid pSMED03	Plasmid pSMED01, Chromosome, Plasmid pSMED02, Plasmid pSMED03
Sinorhizobium meliloti 1021	Chromosome, Plasmid pSymA, Plasmid pSymB	Chromosome, Plasmid pSymA, Plasmid pSymB	Chromosome, Plasmid pSymA, Plasmid pSymB
Slackia heliotrinireducens DSM 20476	NC_013165	NC_013165	NC_013165
Sodalis glossinidius str. 'morsitans'	Chromosome, Plasmid pSG1, Plasmid pSG2, Plasmid pSG3	Chromosome, Plasmid pSG1, Plasmid pSG2, Plasmid pSG3	Chromosome, Plasmid pSG1, Plasmid pSG2, Plasmid pSG3
Sorangium cellulosum 'So ce 56'	NC_010162	NC_010162	NC_010162
Sphingomonas wittichii RW1	Plasmid pSWIT01, Chromosome, Plasmid pSWIT02	Plasmid pSWIT01, Chromosome, Plasmid pSWIT02	Plasmid pSWIT01, Chromosome, Plasmid pSWIT02
Sphingopyxis alaskensis RB2256	F plasmid, Chromosome	F plasmid, Chromosome	F plasmid, Chromosome
Staphylococcus aureus RF122	NC_007622	NC_007622	NC_007622
Staphylococcus aureus subsp. aureus COL	Chromosome, Plasmid pT181	Chromosome, Plasmid pT181	Chromosome, Plasmid pT181
Staphylococcus aureus subsp. aureus JH1	Plasmid pSJH101, Chromosome	Plasmid pSJH101, Chromosome	Plasmid pSJH101, Chromosome
Staphylococcus aureus subsp. aureus JH9	Plasmid pSJH901, Chromosome	Plasmid pSJH901, Chromosome	Plasmid pSJH901, Chromosome
Staphylococcus aureus subsp. aureus MRSA252	NC_002952	NC_002952	NC_002952
Staphylococcus aureus subsp. aureus MSSA476	Plasmid pSAS, Chromosome	Plasmid pSAS, Chromosome	Plasmid pSAS, Chromosome
Staphylococcus aureus subsp. aureus MW2	NC_003923	NC_003923	NC_003923
Staphylococcus aureus subsp. aureus Mu3	NC_009782	NC_009782	NC_009782
Staphylococcus aureus subsp. aureus Mu50	Chromosome, Plasmid VRSAp	Chromosome, Plasmid VRSAp	Chromosome, Plasmid VRSAp
Staphylococcus aureus subsp. aureus N315	Chromosome, Plasmid pN315	Chromosome, Plasmid pN315	Chromosome, Plasmid pN315
Staphylococcus aureus subsp. aureus NCTC 8325	NC_007795	NC_007795	NC_007795
Staphylococcus aureus subsp. aureus USA300_FPR3757	Chromosome, Plasmid pUSA01, Plasmid pUSA02, Plasmid pUSA03	Chromosome, Plasmid pUSA01, Plasmid pUSA02, Plasmid pUSA03	Chromosome, Plasmid pUSA01, Plasmid pUSA02, Plasmid pUSA03
Staphylococcus aureus subsp. aureus USA300_TCH1516	Chromosome, Plasmid pUSA300HOUMR, Plasmid pUSA01-HOU	Chromosome, Plasmid pUSA300HOUMR, Plasmid pUSA01-HOU	Chromosome, Plasmid pUSA300HOUMR, Plasmid pUSA01-HOU
Staphylococcus aureus subsp. aureus str. Newman	NC_009641	NC_009641	NC_009641
Staphylococcus carnosus subsp. carnosus TM300	NC_012121	NC_012121	NC_012121
Staphylococcus epidermidis ATCC 12228	Chromosome, Plasmid pSE-12228-01, Plasmid pSE-12228-02, Plasmid pSE-12228-03, Plasmid pSE-12228-04, Plasmid pSE-12228-05, Plasmid pSE-12228-06	Chromosome, Plasmid pSE-12228-01, Plasmid pSE-12228-02, Plasmid pSE-12228-03, Plasmid pSE-12228-04, Plasmid pSE-12228-05, Plasmid pSE-12228-06	Chromosome, Plasmid pSE-12228-01, Plasmid pSE-12228-02, Plasmid pSE-12228-03, Plasmid pSE-12228-04, Plasmid pSE-12228-05, Plasmid pSE-12228-06
Staphylococcus epidermidis RP62A	Plasmid pSERP, Chromosome	Plasmid pSERP, Chromosome	Plasmid pSERP, Chromosome
Staphylococcus haemolyticus JCSC1435	Chromosome, Plasmid pSHaeA, Plasmid pSHaeB, Plasmid pSHaeC	Chromosome, Plasmid pSHaeA, Plasmid pSHaeB, Plasmid pSHaeC	Chromosome, Plasmid pSHaeA, Plasmid pSHaeB, Plasmid pSHaeC
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Chromosome, Plasmid pSSP1, Plasmid pSSP2	Chromosome, Plasmid pSSP1, Plasmid pSSP2	Chromosome, Plasmid pSSP1, Plasmid pSSP2
Staphylothermus marinus F1	NC_009033	NC_009033	NC_009033
Stenotrophomonas maltophilia K279a	NC_010943	NC_010943	NC_010943
Stenotrophomonas maltophilia R551-3	NC_011071	NC_011071	NC_011071
Streptococcus agalactiae 2603V/R	NC_004116	NC_004116	NC_004116
Streptococcus agalactiae A909	NC_007432	NC_007432	NC_007432
Streptococcus agalactiae NEM316	NC_004368	NC_004368	NC_004368
Streptococcus dysgalactiae subsp. equisimilis GGS_124	NC_012891	NC_012891	NC_012891
Streptococcus equi subsp. equi 4047	NC_012471	NC_012471	NC_012471
Streptococcus equi subsp. zooepidemicus	NC_012470	NC_012470	NC_012470
Streptococcus equi subsp. zooepidemicus MGCS10565	NC_011134	NC_011134	NC_011134
Streptococcus gordonii str. Challis substr. CH1	NC_009785	NC_009785	NC_009785
Streptococcus mutans UA159	NC_004350	NC_004350	NC_004350
Streptococcus pneumoniae 70585	NC_012468	NC_012468	NC_012468
Streptococcus pneumoniae ATCC 700669	NC_011900	NC_011900	NC_011900
Streptococcus pneumoniae CGSP14	NC_010582	NC_010582	NC_010582
Streptococcus pneumoniae D39	NC_008533	NC_008533	NC_008533
Streptococcus pneumoniae G54	NC_011072	NC_011072	NC_011072
Streptococcus pneumoniae Hungary19A-6	NC_010380	NC_010380	NC_010380
Streptococcus pneumoniae JJA	NC_012466	NC_012466	NC_012466
Streptococcus pneumoniae P1031	NC_012467	NC_012467	NC_012467
Streptococcus pneumoniae R6	NC_003098	NC_003098	NC_003098
Streptococcus pneumoniae TIGR4	NC_003028	NC_003028	NC_003028
Streptococcus pneumoniae Taiwan19F-14	NC_012469	NC_012469	NC_012469
Streptococcus pyogenes M1 GAS	NC_002737	NC_002737	NC_002737
Streptococcus pyogenes MGAS10270	NC_008022	NC_008022	NC_008022
Streptococcus pyogenes MGAS10394	NC_006086	NC_006086	NC_006086
Streptococcus pyogenes MGAS10750	NC_008024	NC_008024	NC_008024
Streptococcus pyogenes MGAS2096	NC_008023	NC_008023	NC_008023
Streptococcus pyogenes MGAS315	NC_004070	NC_004070	NC_004070
Streptococcus pyogenes MGAS5005	NC_007297	NC_007297	NC_007297
Streptococcus pyogenes MGAS6180	NC_007296	NC_007296	NC_007296
Streptococcus pyogenes MGAS8232	NC_003485	NC_003485	NC_003485
Streptococcus pyogenes MGAS9429	NC_008021	NC_008021	NC_008021
Streptococcus pyogenes NZ131	NC_011375	NC_011375	NC_011375
Streptococcus pyogenes SSI-1	NC_004606	NC_004606	NC_004606
Streptococcus pyogenes str. Manfredo	NC_009332	NC_009332	NC_009332
Streptococcus sanguinis SK36	NC_009009	NC_009009	NC_009009
Streptococcus suis 05ZYH33	NC_009442	NC_009442	NC_009442
Streptococcus suis 98HAH33	NC_009443	NC_009443	NC_009443
Streptococcus suis BM407	Plasmid pBM407, Chromosome	Plasmid pBM407, Chromosome	Plasmid pBM407, Chromosome
Streptococcus suis P1/7	NC_012925	NC_012925	NC_012925
Streptococcus suis SC84	NC_012924	NC_012924	NC_012924
Streptococcus thermophilus CNRZ1066	NC_006449	NC_006449	NC_006449
Streptococcus thermophilus LMD-9	Plasmid 1, Chromosome, Plasmid 2	Plasmid 1, Chromosome, Plasmid 2	Plasmid 1, Chromosome, Plasmid 2
Streptococcus thermophilus LMG 18311	NC_006448	NC_006448	NC_006448
Streptococcus uberis 0140J	NC_012004	NC_012004	NC_012004
Streptomyces avermitilis MA-4680	Chromosome, Plasmid SAP1	Chromosome, Plasmid SAP1	Chromosome, Plasmid SAP1
Streptomyces coelicolor A3(2)	Chromosome, Plasmid SCP1, Plasmid SCP2	Chromosome, Plasmid SCP1, Plasmid SCP2	Chromosome, Plasmid SCP1, Plasmid SCP2
Streptomyces griseus subsp. griseus NBRC 13350	NC_010572	NC_010572	NC_010572
Sulfolobus acidocaldarius DSM 639	NC_007181	NC_007181	NC_007181
Sulfolobus islandicus L.S.2.15	NC_012589	NC_012589	NC_012589
Sulfolobus islandicus M.14.25	NC_012588	NC_012588	NC_012588
Sulfolobus islandicus M.16.27	NC_012632	NC_012632	NC_012632
Sulfolobus islandicus M.16.4	NC_012726	NC_012726	NC_012726
Sulfolobus islandicus Y.G.57.14	NC_012622	NC_012622	NC_012622
Sulfolobus islandicus Y.N.15.51	Chromosome, Plasmid pYN01	Chromosome, Plasmid pYN01	Chromosome, Plasmid pYN01
Sulfolobus solfataricus P2	NC_002754	NC_002754	NC_002754
Sulfolobus tokodaii str. 7	NC_003106	NC_003106	NC_003106
Sulfurihydrogenibium azorense Az-Fu1	NC_012438	NC_012438	NC_012438
Sulfurihydrogenibium sp. YO3AOP1	NC_010730	NC_010730	NC_010730
Sulfurimonas denitrificans DSM 1251	NC_007575	NC_007575	NC_007575
Sulfurovum sp. NBC37-1	NC_009663	NC_009663	NC_009663
Symbiobacterium thermophilum IAM 14863	NC_006177	NC_006177	NC_006177
Synechococcus elongatus PCC 6301	NC_006576	NC_006576	NC_006576
Synechococcus elongatus PCC 7942	Chromosome, Plasmid 1	Chromosome, Plasmid 1	Chromosome, Plasmid 1
Synechococcus sp. CC9311	NC_008319	NC_008319	NC_008319
Synechococcus sp. CC9605	NC_007516	NC_007516	NC_007516
Synechococcus sp. CC9902	NC_007513	NC_007513	NC_007513
Synechococcus sp. JA-2-3B'a(2-13)	NC_007776	NC_007776	NC_007776
Synechococcus sp. JA-3-3Ab	NC_007775	NC_007775	NC_007775
Synechococcus sp. PCC 7002	Plasmid pAQ7, Chromosome, Plasmid pAQ1, Plasmid pAQ3, Plasmid pAQ4, Plasmid pAQ5, Plasmid pAQ6	Plasmid pAQ7, Chromosome, Plasmid pAQ1, Plasmid pAQ3, Plasmid pAQ4, Plasmid pAQ5, Plasmid pAQ6	Plasmid pAQ7, Chromosome, Plasmid pAQ1, Plasmid pAQ3, Plasmid pAQ4, Plasmid pAQ5, Plasmid pAQ6
Synechococcus sp. RCC307	NC_009482	NC_009482	NC_009482
Synechococcus sp. WH 7803	NC_009481	NC_009481	NC_009481
Synechococcus sp. WH 8102	NC_005070	NC_005070	NC_005070
Synechocystis sp. PCC 6803	Plasmid pSYSM, Chromosome, Plasmid pSYSA, Plasmid pSYSG, Plasmid pSYSX	Plasmid pSYSM, Chromosome, Plasmid pSYSA, Plasmid pSYSG, Plasmid pSYSX	Plasmid pSYSM, Chromosome, Plasmid pSYSA, Plasmid pSYSG, Plasmid pSYSX
Syntrophobacter fumaroxidans MPOB	NC_008554	NC_008554	NC_008554
Syntrophomonas wolfei subsp. wolfei str. Goettingen	NC_008346	NC_008346	NC_008346
Syntrophus aciditrophicus SB	NC_007759	NC_007759	NC_007759
Teredinibacter turnerae T7901	NC_012997	NC_012997	NC_012997
Thauera sp. MZ1T	Plasmid pTha01, Chromosome	Plasmid pTha01, Chromosome	Plasmid pTha01, Chromosome
Thermoanaerobacter pseudethanolicus ATCC 33223	NC_010321	NC_010321	NC_010321
Thermoanaerobacter sp. X514	NC_010320	NC_010320	NC_010320
Thermoanaerobacter tengcongensis MB4	NC_003869	NC_003869	NC_003869
Thermobifida fusca YX	NC_007333	NC_007333	NC_007333
Thermococcus gammatolerans EJ3	NC_012804	NC_012804	NC_012804
Thermococcus kodakarensis KOD1	NC_006624	NC_006624	NC_006624
Thermococcus onnurineus NA1	NC_011529	NC_011529	NC_011529
Thermococcus sibiricus MM 739	NC_012883	NC_012883	NC_012883
Thermodesulfovibrio yellowstonii DSM 11347	NC_011296	NC_011296	NC_011296
Thermofilum pendens Hrk 5	Chromosome, Plasmid pTPEN01	Chromosome, Plasmid pTPEN01	Chromosome, Plasmid pTPEN01
Thermomicrobium roseum DSM 5159	Chromosome, Plasmid unnamed	Chromosome, Plasmid unnamed	Chromosome, Plasmid unnamed
Thermoplasma acidophilum DSM 1728	NC_002578	NC_002578	NC_002578
Thermoplasma volcanium GSS1	NC_002689	NC_002689	NC_002689
Thermoproteus neutrophilus V24Sta	NC_010525	NC_010525	NC_010525
Thermosipho africanus TCF52B	NC_011653	NC_011653	NC_011653
Thermosipho melanesiensis BI429	NC_009616	NC_009616	NC_009616
Thermosynechococcus elongatus BP-1	NC_004113	NC_004113	NC_004113
Thermotoga lettingae TMO	NC_009828	NC_009828	NC_009828
Thermotoga maritima MSB8	NC_000853	NC_000853	NC_000853
Thermotoga neapolitana DSM 4359	NC_011978	NC_011978	NC_011978
Thermotoga petrophila RKU-1	NC_009486	NC_009486	NC_009486
Thermotoga sp. RQ2	NC_010483	NC_010483	NC_010483
Thermus thermophilus HB27	Chromosome, Plasmid pTT27	Chromosome, Plasmid pTT27	Chromosome, Plasmid pTT27
Thermus thermophilus HB8	Chromosome, Plasmid pTT8, Plasmid pTT27	Chromosome, Plasmid pTT8, Plasmid pTT27	Chromosome, Plasmid pTT8, Plasmid pTT27
Thioalkalivibrio sp. HL-EbGR7	NC_011901	NC_011901	NC_011901
Thiobacillus denitrificans ATCC 25259	NC_007404	NC_007404	NC_007404
Thiomicrospira crunogena XCL-2	NC_007520	NC_007520	NC_007520
Tolumonas auensis DSM 9187	NC_012691	NC_012691	NC_012691
Treponema denticola ATCC 35405	NC_002967	NC_002967	NC_002967
Treponema pallidum subsp. pallidum SS14	NC_010741	NC_010741	NC_010741
Treponema pallidum subsp. pallidum str. Nichols	NC_000919	NC_000919	NC_000919
Trichodesmium erythraeum IMS101	NC_008312	NC_008312	NC_008312
Tropheryma whipplei TW08/27	NC_004551	NC_004551	NC_004551
Tropheryma whipplei str. Twist	NC_004572	NC_004572	NC_004572
Ureaplasma parvum serovar 3 str. ATCC 27815	NC_010503	NC_010503	NC_010503
Ureaplasma parvum serovar 3 str. ATCC 700970	NC_002162	NC_002162	NC_002162
Ureaplasma urealyticum serovar 10 str. ATCC 33699	NC_011374	NC_011374	NC_011374
Variovorax paradoxus S110	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2
Verminephrobacter eiseniae EF01-2	Plasmid pVEIS01, Chromosome	Plasmid pVEIS01, Chromosome	Plasmid pVEIS01, Chromosome
Vibrio cholerae M66-2	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Vibrio cholerae MJ-1236	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2
Vibrio cholerae O1 biovar El Tor str. N16961	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Vibrio cholerae O395	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2	Chromosome 1, Chromosome 2
Vibrio cholerae O395	Chromosome I, Chromosome II	Chromosome I, Chromosome II	Chromosome I, Chromosome II
Vibrio fischeri ES114	Chromosome I, Chromosome II, Plasmid pES100	Chromosome I, Chromosome II, Plasmid pES100	Chromosome I, Chromosome II, Plasmid pES100
Vibrio fischeri MJ11	Chromosome II, Plasmid pMJ100, Chromosome I	Chromosome II, Plasmid pMJ100, Chromosome I