Quick links: 1990-1999, 2000, 2001, 2002
Chain, P., J. Lamerdin, F. Larimer, W. Regala, V. Lao, M. Land, L. Hauser, A. Hooper, M. Klotz, J. Norton, L. Sayavedra- Soto, D. Arciero, N. Hommes, M. Whittaker, and D. Arp, "Complete Genome Sequence of the Ammonia-Oxidizing Bacterium and Obligate Chemolithoautotroph NitrosomonaseEuropaea," J. Bacteriology 185(9):2759-2773 (May 2003).
Chen, Y., and D. Xu, "Computational analyses of high-throughput protein-protein interaction data," Current Protein & Peptide Science 4(3):159-180 (June 2003).
Chen, Y., T. Joshi, Y. Xu, and D. Xu, "Towards Automated Derivation of Biological Pathways Using High-Throughput Biological Date," in Proc. of the 3rd IEEE Symposium on Bioinformatics and Bioengineering, IEEE/CS Press, pp. 18-25 (2003).
Chen, Z. Z., T. Jiant, G. H. Lin, J. J. Wen, D. Xu, J. B. Xu, and Y. Xu, "Approximation algorithms for NMR spectral peak assignment," Theor. Comp. Sci. 299(1-3):211-229 (April 2003).
Gunter, L. E., G. T. Roberts, K. Lee, F. W. Larimer, and G. A. Tuskan, "The development of two flanking SCAR markers linked to a sex determination locus in Salix viminalis L.," J. Heredity 94(2):185-189 (March 2003).
Guo, J. T., D. Xu, D. Kim, and Y. Xu, "Improving the performance of DomainParser for structural domain partition using neural network," Nucl. Acids Res. 31(3):944-952 (February 2003).
Lin, G., D. Xu, Z.-Z. Chen, T. Jiang, J. Wen, and Y. Xu, "Computational Assignments of Protein Backbone NMR Peaks by Efficient Bounding and Filtering," J. Bioinformatic and Computational Biology 31:944-952 (2003).
Olman, V., D. Xu, and Y. Xu, "Identification of Regulatory Binding Sites Using Minimum Spanning Trees," in Proc. 2003 Pacific Symp. on Biocomputing (PSB), pp. 327-338 (2003).
Olman, V., D. Xu, and Y. Xu, "CUBIC: Identification of Regulatory Binding Sites through Data Clustering," J. Bioinformatics and Computational Biology 1:20-40 (2003).
Palenik B, Brahamsha B, Larimer FW, Land M, Hauser L, Chain P, Lamerdin J, Regala W, Allen EE, McCarren J, Paulsen I, Dufresne A, Partensky F, Webb EA, Waterbury J "The genome of a motile marine Synechococcus" Nature 424 (6952): 1037-1042 AUG 28 2003
Rocap G, Larimer FW, Lamerdin J, Malfatti S, Chain P, Ahlgren NA, Arellano A, Coleman M, Hauser L, Hess WR, Johnson ZI, Land M, Lindell D, Post AF, Regala W, Shah M, Shaw SL, Steglich C, Sullivan MB, Ting CS, Tolonen A, Webb EA, Zinser ER, Chisholm SW "Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation" Nature 424 (6952): 1042-1047 AUG 28 2003
Saunders NFW, Thomas T, Curmi PMG, Mattick JS, Kuczek E, Slade R, Davis J, Franzmann PD, Boone D, Rusterholtz K, Feldman R, Gates C, Bench S, Sowers K, Kadner K, Aerts A, Dehal P, Detter C, Glavina T, Lucas S, Richardson P, Larimer F, Hauser L, Land M, Cavicchioli R "Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii" Genome Research, 13 (7): 1580-1588 JUL 2003
Sun, HD; Li, M; Xu, Y "MOLVIE: an interactive visualization environment for molecular structures" Computer Methods and Programs in Biomedicine, 71 (1): 85-90 MAY 2003
Xu, D; Kim, D; Dam, P; Shah, M; Uberbacher, EC; Xu, Y "Characterization of protein structure and function at genome scale with a computational prediction pipeline" Genetic Engineering: Principles and Methods, 25 (25): 269-293 2003
Xu, D; Olman, V; Wang, L; Xu, Y "EXCAVATOR: a computer program for efficiently mining gene expression data" Nucleic Acids Research, 31 (19): 5582-5589 OCT 1 2003
Zhou, JZ; Xia, BC; Huang, HS; Treves, DS; Hauser, LJ; Mural, RJ; Palumbo, AV; Tiedje, JM "Bacterial phylogenetic diversity and a novel candidate division of two humid region, sandy surface soils" Soil Biol. Biochemistry, 35 (7): 915-924 JUL 2003
Shah, M., S. Passovets, D. Kim, K. Ellrott, L. Wang, I. Vokler, P. LoCascio, D. Xu, and Y. Xu, "A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale," in Proc. of the 3rd IEEE Symposium on Bioinformatics and Bioengineering, IEEE/CS Press, pp. 3-10 (2003).
There is also a list of publications for 1990-1999, 2000, 2001, and 2002.